Glyma04g13180 - SoyBase

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Report for Sequence Feature Glyma04g13180

Feature Type:	gene_model
Chromosome:	Gm04
Start:	12758293
stop:	12760635
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g13180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31725	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic protein of unknown function (DUF842) \| chr2:13486447-13487391 REVERSE LENGTH=149	SoyBase	E_val: 1.00E-66	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3377	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21096	Panther	UNCHARACTERIZED	JGI		ISS
PF05811	PFAM	Eukaryotic protein of unknown function (DUF842)	JGI		ISS
UniRef100_G7IYL4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein FAM136A n=1 Tax=Medicago truncatula RepID=G7IYL4_MEDTR	SoyBase	E_val: 5.00E-76	ISS
UniRef100_I1JVQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVQ7_SOYBN	SoyBase	E_val: 7.00E-109	ISS

Expression Patterns of Glyma04g13180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g13180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g117900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g13180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g13180

Limit To All Plant Sequences

>Glyma04g13180.3   sequence type=transcript   gene model=Glyma04g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTGAAGTTTAAACCCTGGAAGGGCCTAAAGGCCCTAAAACCCTTTGAAACGGAATTGTGTACGAAGAGAAAGAGGAAGCAGAAGAGCAGAGTTGCAACTCAATAGCGATTGAGAGTTTCCGAAAAGAAATTCATTTCACGCATTTTCAGTAAGTATCAGATGGATCACTTTGCAGCCCATGAAGAGCAACTTGCTTCCCTGAGAATGAGGCAGAAATTTGAAGAAGTAAATGTGGCTGCTCAAACTAATCTTGCCCCTGTCCAGGACTATGTCAATTTTACCCTTCAGAAAGCCTATTTTATGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAGGAAGAAATAAGCAGTTGTGTCGAAAATTGCAGTATTCCTCTTTCTAATGTGCAACACACATTTGATCATGAGATGGCACAGTTTCAGGAGAGATTGAATAGATCTCTGATGGTGTGTCAAGATAAGTACGAGGCAGCTAGGCTCCAGAAGAAAAATGATGCTATGAATGATTTCGTTTCCTGTGCTGACCAGTCAATCCAGGAAAACATCAAGACGTTGCCACATCTTGCCAACAAGTTGAAAGCTTCCTTTGGAATTAGGGACAATGGTTCCTCGTAGCTTGTTGAAAGCTTCCTACATTATTTCTTTTTTCTTTTTAAAAGAGAGGGTAAAAGACACAATTTTGCTCTCCGTGAAAGCATTGATTTATTTGGTTGTATCTTATCTGGATTGATTATTTATGAAAAGTTAATGTATGCATTCCTAAATTTACATACTTTATCCTTATTGTTGAATTTACCTATTCTTTTTCCTATTTCATTCATATTTTTCTTAAACTAAAC

Coding sequences of Glyma04g13180

Limit To All Plant Sequences

>Glyma04g13180.2   sequence type=CDS   gene model=Glyma04g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCACTTTGCAGCCCATGAAGAGCAACTTGCTTCCCTGAGAATGAGGCAGAAATTTGAAGAAGTAAATGTGGCTGCTCAAACTAATCTTGCCCCTGTCCAGGACTATGTCAATTTTACCCTTCAGAAAGCCTATTTTATGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAGGAAGAAATAAGCAGTTGTGTCGAAAATTGCAGTATTCCTCTTTCTAATGTGCAACACACATTTGATCATGAGATGGCACAGTTTCAGGAGAGATTGAATAGATCTCTGATGGTGTGTCAAGATAAGTACGAGGCAGCTAGGCTCCAGAAGAAAAATGATGCTATGAATGATTTCGTTTCCTGTGCTGACCAGTCAATCCAGGAAAACATCAAGACGTTGCCACATCTTGCCAACAAGTTGAAAGCTTCCTTTGGAATTAGGGACAATGGTTCCTCGTAG

>Glyma04g13180.3   sequence type=CDS   gene model=Glyma04g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCACTTTGCAGCCCATGAAGAGCAACTTGCTTCCCTGAGAATGAGGCAGAAATTTGAAGAAGTAAATGTGGCTGCTCAAACTAATCTTGCCCCTGTCCAGGACTATGTCAATTTTACCCTTCAGAAAGCCTATTTTATGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAGGAAGAAATAAGCAGTTGTGTCGAAAATTGCAGTATTCCTCTTTCTAATGTGCAACACACATTTGATCATGAGATGGCACAGTTTCAGGAGAGATTGAATAGATCTCTGATGGTGTGTCAAGATAAGTACGAGGCAGCTAGGCTCCAGAAGAAAAATGATGCTATGAATGATTTCGTTTCCTGTGCTGACCAGTCAATCCAGGAAAACATCAAGACGTTGCCACATCTTGCCAACAAGTTGAAAGCTTCCTTTGGAATTAGGGACAATGGTTCCTCGTAG

Predicted protein sequences of Glyma04g13180

Limit To All Plant Sequences

>Glyma04g13180.2   sequence type=predicted peptide   gene model=Glyma04g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHFAAHEEQLASLRMRQKFEEVNVAAQTNLAPVQDYVNFTLQKAYFMCAYECFDRSKRQEEISSCVENCSIPLSNVQHTFDHEMAQFQERLNRSLMVCQDKYEAARLQKKNDAMNDFVSCADQSIQENIKTLPHLANKLKASFGIRDNGSS*

>Glyma04g13180.3   sequence type=predicted peptide   gene model=Glyma04g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHFAAHEEQLASLRMRQKFEEVNVAAQTNLAPVQDYVNFTLQKAYFMCAYECFDRSKRQEEISSCVENCSIPLSNVQHTFDHEMAQFQERLNRSLMVCQDKYEAARLQKKNDAMNDFVSCADQSIQENIKTLPHLANKLKASFGIRDNGSS*

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