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Report for Sequence Feature Glyma04g13160

Feature Type:gene_model
Chromosome:Gm04
Start:12731958
stop:12738646
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g13160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30695AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13079269-13081095 REVER SoyBaseE_val: 2.00E-50ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006399GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process SoyBaseN/AISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009073GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process SoyBaseN/AISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0016226GO-bp Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0045036GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05697PFAM Bacterial trigger factor protein (TF) JGI ISS
UniRef100_C6TL42UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TL42_SOYBN SoyBaseE_val: 5.00E-147ISS
UniRef100_G7IYL6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Trigger factor n=1 Tax=Medicago truncatula RepID=G7IYL6_MEDTR SoyBaseE_val: 3.00E-94ISS

Expression Patterns of Glyma04g13160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g13160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g117800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g13160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g13160
>Glyma04g13160.5   sequence type=transcript   gene model=Glyma04g13160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTACAATCACGTCATAGAAAAAAAAACTAGTTTAAAAGGAAACTTCACAATGCGAAACAAAGATAAGGCAGTGCTACAGTGCTAGCAGCAGAGTCTCGCCGTAGAGCATTCCAGAGGGTGCATGTTTATCCTTAAAGAGGGGAAAAAGAATCTTACAGGTTCCAAGAACTGTGGTGCATATTTAATATTCTTCTGGCACACCCTCTCTTTGGGGGTTGGATGCCATAGGTAGAAACAGAATTGGCCAAAGAAAGAAACTGGATTCTAATCAGAGAAATACTGTGGAGACATTTGAAAGAAAGAAAGAATGAATGCAGCATCTCAAACCTTCATCTTAAATCTAACTCCACAGGTGGCCACATGTAAGCAGAGAGTACATGAGTTTATTGTGCCTAGCCTGAATTGTAGACATTTCGGTCTTTCATGGAAGCTTAGACATGGTGCAAGAAATATTTTAAGAAGGGAATACATTAAATGCCTTCCTACTGCTGATGTATTATCAGATGCCCAAATTTCTTCTGATCAGTTTGAGGACTTCTCTGTCTCTGTTGCTGACAACAATGATTCTAGTGAACTAAAGATAAGCGTAGAAGTATCTGGAAACAAAACTCAAAGGATATTTGATGACGTCTTTAAGAAAATGGTTGCAGCTGCACAACCTATCCCAGGATTTCGAAGAGTAAAAGGAGGTGGAGTATTTATGCGTACCTAAAATAGAAGAGTACTTTGTTGTTTTATTTGTGTGTGTTTGTGTTTTGTTTTTTTTGGCGGGGGGAGTCTATGCAAAGGCAATGTATTTTCTGCTGCTACTCTTGGTCACAAATGCATAGCATGCTAATCATAATTGGTTAACATATTTATTACCAATGAGTGTTCACTTTTGTCATGAATTTTGGTGGTGATTCATGTTCAATTTATTTCAAAGCCAATTAATGATGTTTGATGCATAATTTTGTTACGTTAAGAGGATTAAATTCATTATCAAAAGAGGAAAATAAAGCAAATGAAGATAAAAAGCCAAATGCATTTTGATGTAAATCTCATAGATGATAATTATAAGATAGATCATGATAGGATCTCAATTTTAATCATGATTATGATATGATCAGCCATGAGATGCTAGGCAGTCCTTTGTTTCTTAAAATTGTCTTCTCTCTTGTCAGAGCTCTTCATTAGACCATAAAACTACTCCCTGATGATATTAGATGGAGCAGTCTTTTTTTAGCACATTAAAAAATGATAATAATAACAGAACA

>Glyma04g13160.6   sequence type=transcript   gene model=Glyma04g13160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTACAATCACGTCATAGAAAAAAAAACTAGTTTAAAAGGAAACTTCACAATGCGAAACAAAGATAAGGCAGTGCTACAGTGCTAGCAGCAGAGTCTCGCCGTAGAGCATTCCAGAGAGGGGAAAAAGAATCTTACAGGTTCCAAGAACTGTGGTGCATATTTAATATTCTTCTGGCACACCCTCTCTTTGGGGGTTGGATGCCATAGGTAGAAACAGAATTGGCCAAAGAAAGAAACTGGATTCTAATCAGAGAAATACTGTGGAGACATTTGAAAGAAAGAAAGAATGAATGCAGCATCTCAAACCTTCATCTTAAATCTAACTCCACAGGTGGCCACATGTAAGCAGAGAGTACATGAGTTTATTGTGCCTAGCCTGAATTGTAGACATTTCGGTCTTTCATGGAAGCTTAGACATGGTGCAAGAAATATTTTAAGAAGGGAATACATTAAATGCCTTCCTACTGCTGATGTATTATCAGATGCCCAAATTTCTTCTGATCAGTTTGAGGACTTCTCTGTCTCTGTTGCTGACAACAATGATTCTAGTGAACTAAAGATAAGCGTAGAAGTATCTGGAAACAAAACTCAAAGGATATTTGATGACGTCTTTAAGAAAATGGTTGCAGCTGCACAACCTATCCCAGGATTTCGAAGAGTAAAAGGAGGAAAAACGCCAGATATACCAAAAAACATTTTATTAGAGGTGCTTGGACCTTCCAAAGTTTTCAATGAAGTTATCAAGAAAATAATCAACTCAACTGTAGCTGAATACGTGGAGAAGGAGTGTTTGATAGTTAGCAAGGACCTTAGAGTTGAGCAAAGCTTTGAAGATCTTGAAACTACTTTTGAGGAAGGAGAAAAATTCAGCTTTGATGTTGTACTTGAGCTTCAAAAATAAATTGAATTACATTTGTTTGTTCAAATTTTATCTTATATTTTGCTGTTTCAATGTGATAGTTTTCAATACCATATATAACTCTTGCAAGAAAATATTTACTTCTAGTGCTGGAGAGCACCTCACAATCAGGAGATGCAAAAAAAAAAAAAACTCTCTTAGACAAGCTCTTACTCCTTAATTACACCAAGCAAATTTTATGGCTTCCCTT

>Glyma04g13160.7   sequence type=transcript   gene model=Glyma04g13160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTACAATCACGTCATAGAAAAAAAAACTAGTTTAAAAGGAAACTTCACAATGCGAAACAAAGATAAGGCAGTGCTACAGTGCTAGCAGCAGAGTCTCGCCGTAGAGCATTCCAGAGGGTGCATGTTTATCCTTAAAGAGGGGAAAAAGAATCTTACAGGTTCCAAGAACTGTGGTGCATATTTAATATTCTTCTGGCACACCCTCTCTTTGGGGGTTGGATGCCATAGGTAGAAACAGAATTGGCCAAAGAAAGAAACTGGATTCTAATCAGAGAAATACTGTGGAGACATTTGAAAGAAAGAAAGAATGAATGCAGCATCTCAAACCTTCATCTTAAATCTAACTCCACAGGTGGCCACATGTAAGCAGAGAGTACATGAGTTTATTGTGCCTAGCCTGAATTGTAGACATTTCGGTCTTTCATGGAAGCTTAGACATGGTGCAAGAAATATTTTAAGAAGGGAATACATTAAATGCCTTCCTACTGCTGATGTATTATCAGATGCCCAAATTTCTTCTGATCAGTTTGAGGACTTCTCTGTCTCTGTTGCTGACAACAATGATTCTAGTGAACTAAAGATAAGCGTAGAAGTATCTGGAAACAAAACTCAAAGGATATTTGATGACGTCTTTAAGAAAATGGTTGCAGCTGCACAACCTATCCCAGGATTTCGAAGAGTAAAAGGAGGAAAAACGCCAGATATACCAAAAAACATTTTATTAGAGGTGCTTGGACCTTCCAAAGTTTTCAATGAAGTTATCAAGAAAATAATCAACTCAACTGTAGCTGAATACGTGGAGAAGGAGTGTTTGATAGTTAGCAAGGACCTTAGAGTTGAGCAAAGCTTTGAAGATCTTGAAACTACTTTTGAGGAAGGAGAAAAATTCAGCTTTGATGTTGTACTTGAGCTTCAAAAATAAATTGAATTACATTTGTTTGTTCAAATTTTATCTTATATTTTGCTGTTTCAATGTGATAGTTTTCAATACCATATATAACTCTTGCAAGAAAATATTTACTTCTAGTGCTGGAGAGCACCTCACAATCAGGAGATGCAAAAAAAAAAAAAACTCTCTTAGACAAGCTCTTACTCCTTAATTACACCAAGCAAATTTTATGGCTTCCCTT
Coding sequences of Glyma04g13160
>Glyma04g13160.4   sequence type=CDS   gene model=Glyma04g13160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCAGCATCTCAAACCTTCATCTTAAATCTAACTCCACAGGTGGCCACATGTAAGCAGAGAGTACATGAGTTTATTGTGCCTAGCCTGAATTGTAGACATTTCGGTCTTTCATGGAAGCTTAGACATGGTGCAAGAAATATTTTAAGAAGGGAATACATTAAATGCCTTCCTACTGCTGATGTATTATCAGATGCCCAAATTTCTTCTGATCAGTTTGAGGACTTCTCTGTCTCTGTTGCTGACAACAATGATTCTAGTGAACTAAAGATAAGCGTAGAAGTATCTGGAAACAAAACTCAAAGGATATTTGATGACGTCTTTAAGAAAATGGTTGCAGCTGCACAACCTATCCCAGGATTTCGAAGAGTAAAAGGAGATACCAAAAAACATTTTATTAGAGGTGCTTGGACCTTCCAAAGTTTTCAATGA

>Glyma04g13160.5   sequence type=CDS   gene model=Glyma04g13160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCAGCATCTCAAACCTTCATCTTAAATCTAACTCCACAGGTGGCCACATGTAAGCAGAGAGTACATGAGTTTATTGTGCCTAGCCTGAATTGTAGACATTTCGGTCTTTCATGGAAGCTTAGACATGGTGCAAGAAATATTTTAAGAAGGGAATACATTAAATGCCTTCCTACTGCTGATGTATTATCAGATGCCCAAATTTCTTCTGATCAGTTTGAGGACTTCTCTGTCTCTGTTGCTGACAACAATGATTCTAGTGAACTAAAGATAAGCGTAGAAGTATCTGGAAACAAAACTCAAAGGATATTTGATGACGTCTTTAAGAAAATGGTTGCAGCTGCACAACCTATCCCAGGATTTCGAAGAGTAAAAGGAGGTGGAGTATTTATGCGTACCTAA

>Glyma04g13160.6   sequence type=CDS   gene model=Glyma04g13160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCAGCATCTCAAACCTTCATCTTAAATCTAACTCCACAGGTGGCCACATGTAAGCAGAGAGTACATGAGTTTATTGTGCCTAGCCTGAATTGTAGACATTTCGGTCTTTCATGGAAGCTTAGACATGGTGCAAGAAATATTTTAAGAAGGGAATACATTAAATGCCTTCCTACTGCTGATGTATTATCAGATGCCCAAATTTCTTCTGATCAGTTTGAGGACTTCTCTGTCTCTGTTGCTGACAACAATGATTCTAGTGAACTAAAGATAAGCGTAGAAGTATCTGGAAACAAAACTCAAAGGATATTTGATGACGTCTTTAAGAAAATGGTTGCAGCTGCACAACCTATCCCAGGATTTCGAAGAGTAAAAGGAGGAAAAACGCCAGATATACCAAAAAACATTTTATTAGAGGTGCTTGGACCTTCCAAAGTTTTCAATGAAGTTATCAAGAAAATAATCAACTCAACTGTAGCTGAATACGTGGAGAAGGAGTGTTTGATAGTTAGCAAGGACCTTAGAGTTGAGCAAAGCTTTGAAGATCTTGAAACTACTTTTGAGGAAGGAGAAAAATTCAGCTTTGATGTTGTACTTGAGCTTCAAAAATAA

>Glyma04g13160.7   sequence type=CDS   gene model=Glyma04g13160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCAGCATCTCAAACCTTCATCTTAAATCTAACTCCACAGGTGGCCACATGTAAGCAGAGAGTACATGAGTTTATTGTGCCTAGCCTGAATTGTAGACATTTCGGTCTTTCATGGAAGCTTAGACATGGTGCAAGAAATATTTTAAGAAGGGAATACATTAAATGCCTTCCTACTGCTGATGTATTATCAGATGCCCAAATTTCTTCTGATCAGTTTGAGGACTTCTCTGTCTCTGTTGCTGACAACAATGATTCTAGTGAACTAAAGATAAGCGTAGAAGTATCTGGAAACAAAACTCAAAGGATATTTGATGACGTCTTTAAGAAAATGGTTGCAGCTGCACAACCTATCCCAGGATTTCGAAGAGTAAAAGGAGGAAAAACGCCAGATATACCAAAAAACATTTTATTAGAGGTGCTTGGACCTTCCAAAGTTTTCAATGAAGTTATCAAGAAAATAATCAACTCAACTGTAGCTGAATACGTGGAGAAGGAGTGTTTGATAGTTAGCAAGGACCTTAGAGTTGAGCAAAGCTTTGAAGATCTTGAAACTACTTTTGAGGAAGGAGAAAAATTCAGCTTTGATGTTGTACTTGAGCTTCAAAAATAA
Predicted protein sequences of Glyma04g13160
>Glyma04g13160.4   sequence type=predicted peptide   gene model=Glyma04g13160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNAASQTFILNLTPQVATCKQRVHEFIVPSLNCRHFGLSWKLRHGARNILRREYIKCLPTADVLSDAQISSDQFEDFSVSVADNNDSSELKISVEVSGNKTQRIFDDVFKKMVAAAQPIPGFRRVKGDTKKHFIRGAWTFQSFQ*

>Glyma04g13160.5   sequence type=predicted peptide   gene model=Glyma04g13160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNAASQTFILNLTPQVATCKQRVHEFIVPSLNCRHFGLSWKLRHGARNILRREYIKCLPTADVLSDAQISSDQFEDFSVSVADNNDSSELKISVEVSGNKTQRIFDDVFKKMVAAAQPIPGFRRVKGGGVFMRT*

>Glyma04g13160.6   sequence type=predicted peptide   gene model=Glyma04g13160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNAASQTFILNLTPQVATCKQRVHEFIVPSLNCRHFGLSWKLRHGARNILRREYIKCLPTADVLSDAQISSDQFEDFSVSVADNNDSSELKISVEVSGNKTQRIFDDVFKKMVAAAQPIPGFRRVKGGKTPDIPKNILLEVLGPSKVFNEVIKKIINSTVAEYVEKECLIVSKDLRVEQSFEDLETTFEEGEKFSFDVVLELQK*

>Glyma04g13160.7   sequence type=predicted peptide   gene model=Glyma04g13160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNAASQTFILNLTPQVATCKQRVHEFIVPSLNCRHFGLSWKLRHGARNILRREYIKCLPTADVLSDAQISSDQFEDFSVSVADNNDSSELKISVEVSGNKTQRIFDDVFKKMVAAAQPIPGFRRVKGGKTPDIPKNILLEVLGPSKVFNEVIKKIINSTVAEYVEKECLIVSKDLRVEQSFEDLETTFEEGEKFSFDVVLELQK*






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