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Report for Sequence Feature Glyma04g13088

Feature Type:gene_model
Chromosome:Gm04
Start:12682918
stop:12730768
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g13088
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G51540AT Annotation by Michelle Graham. TAIR10: Zincin-like metalloproteases family protein | chr5:20932071-20936284 FORWARD LENGTH=706 SoyBaseE_val: 0ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0019243GO-bp Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0004222GO-mf Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity SoyBaseN/AISS
KOG2090 KOG Metalloendopeptidase family - mitochondrial intermediate peptidase JGI ISS
PTHR11804Panther PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED JGI ISS
PTHR11804:SF5Panther MITOCHONDRIAL INTERMEDIATE PEPTIDASE JGI ISS
PF01432PFAM Peptidase family M3 JGI ISS
UniRef100_G7IYL7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial intermediate peptidase n=1 Tax=Medicago truncatula RepID=G7IYL7_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233A3C5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A3C5 related cluster n=1 Tax=unknown RepID=UPI000233A3C5 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g13088
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g13088 not represented in the dataset
Glyma04g13088 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g13088 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g117400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g13088
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g13088
>Glyma04g13088.2   sequence type=transcript   gene model=Glyma04g13088   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTAAGCAGGTGTGGGCGCAGCGTTTTGAATCAGTGCGAACTGAGAAGCATGAGCGCAGCGATGTGGAGTGTTGTGATCAGAAGAAGCAGTTGGGAGATTCTCCGTCAGATTAAACGGAATATTCTTCTCGGCGTCGCTATCAGAACGTTCTCCACTCCCACCGGTCTCTATGGCTTCCCCCATTTGAAGACCCCCAAAGGCTTTCAACCTTTCGTCGATGATGCCATTCAAAGGTCTGGAGAACTCATTAGTTACATTTGTTCGAAAAGGCCAGCTGCTGAAGTAATGCGAGCAATGGATGAGATTTCTGATACTGTCTGCTCTGTTGTCGACTCTGCTGAATTGTGTAGGAATACCCACCCTGACAGGGAGTTTGTTGAGGAGGCCACCAAGGCATCGATGAAAATTAATGAATATCTACATTATCTGAACACAAATCATGATCTATATGATGCGGTGAAGAAAGCTGAGCAAGAATGTCATATGCTTTCTGAGGAAGCTCAAAGGGGAGTTAGAAACTTACGCGCCGACTTTGAAAGGGGTGGAATTCATCTTTGCCCTGAGAAATTAGATCGAGTGAACAAGCTAAATATTGAAATTTCTCAGCTATGCAGAGAGTACAATGAAAATATTGTAATGGACCCAGGAACTGTTGATATATATCCTTCATCTCGCATCCCCAAGAATCTGCATTATCTTGTAAAGCCTATCTATTGTTCAAAATCTTTAATAACCAAGGATTTATCAGGGTCCGGGGACACCCTAAAAGAGAAAGGATTTCGGATTACGACAAACCCACAAACTCTTACATCTGTACTACAATTTTCATCAGATGATGAGGTTAGGAAAATGGTATATATACGAGGAAATTCTGTGCCACATGCAAATGTTGATGTCCTCAAAAGGCTTATATCTGCACGACATGAGCTAGCTCAGATAATGGGGTCTAGATCTTATGCTGAATTTTCTGTTAAGCCTAACATGGCTGTATCACCAAAAGTCGTAACGTCATTTTTACTCGAAATGAGCAAGATGGTCCAGGCTAAGTCTATAGAGGAGCGTAAGTTAGTTATGAAATTCAAGAGAGAAAAATGCGGTCGAAGTGATGGAGATTTAAGGCCATGGGATGAGACCTATTACATGACAATGATGAAGTCCTCTTCATATAAATTGGATGCTTCGGTTGTAGGTTCATATTTTTCTCTGTCAAACTGTATTGAGGGTTTGAAGGTTCTGGTGCAGTCATTGTTTGGTGCAACCTTTCGTATCATCCCTCTAGCACCTGGTGAATCTTGGGATCCACATGTACTTAAACTGTCTCTTGATCATCCTGAAGAGGGTGACTTGGGATATCTCTACCTCGATTTGTACTCAAGAAAGGGAAAGTATCCTGGTTGTGCTCACTTTGCAATTAAAGGGGCTCGCAGAATTTCTCAAACAGAATACCAACTTCCAATTGTAGCTCTTGTTTGTAACTTTTCGGGTTCTCGGAATCCATCAGCTGTAAGGCTCAATCATTGGGAAGTAGAAACTCTATTTCATGAGTTTGGACATGCTCTTCATTCACTGCTTTCAAGAACGATACTATGCATGGGATTATCGAGTTTTGAAAAAATTTGCGAGACACCATTCAACTGGTGAAGAAATACCACAGAAGTTGGTTGAGTCAATGCAGGGTGCCAGAGATATGTTTGCTGCAACAGATCTGCAACGTCAGATCTTCTATGCTCTTGTTGACCAGACACTCTTTGGAGAGCAGCCATTCCCTCATGGTGATATTAGTTCTGTTGTTGCAAAACTGAAAAGAGAGCACACTAGTTGTGAACATGTGGAAGGCACACATTGGGAGGCCCGATTTAGTCATCTACTTAATTATGGTGCAGGTTATTATAGCTATTTGTATGCAAAGTGTTTTGCTGCAACCATATGGAAGAAGCTGTGCCAGGAGGATCCACTTTCACCCACTACAGGATTTGCTTTAAGAACAAAATTCTTACAGCATGGAGGAGCCAGAGAACCTGCTGCATTGTTGAATGATCTAGCAGGAGACGGGATATATAGGTATTGTGATGGAGGGATAATGCCTGATATTTCATGCCTATGTGATGAAATGAAGCTGTTTGAATAATATCAGAAGCAGGTCCATTTGTTTAGATTTTAAAGAAATAGGACTTAACCAGCACTCAGCATATTTTCCAGAGACAGCCAATAGTATCACTTGAACGATCCCTATCATATGAAAAACTTAAAGAGAGGATCAAGGTACAATTTCATGTGTCAATCACATACACTCGCATTAAAAGAAACGAAATGAAGTAAGGAATATTTCTACATGGCATCTAAACACAGGCTGGATCAGATGTTTGTAGACATCTTAGAGAATTGATGTTAATGTGTAGCATCATTCATTTATTTTATATATTCTTTTTATTTAGATATTTTATATCACTTTTTATTTTAACCATTACACTTTTACATTATTCATTCTATTATTTCAATGTCATACCTCAAGATATTATAACCATTTGTAAAAATTAACATAACCAAAGTATGACATGTACTCAAGTGTATTATTATTATTATTATTATTATTATCATTATCATTATTATT
Coding sequences of Glyma04g13088
>Glyma04g13088.1   sequence type=CDS   gene model=Glyma04g13088   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGCAGCGATGTGGAGTGTTGTGATCAGAAGAAGCAGTTGGGAGATTCTCCGTCAGATTAAACGGAATATTCTTCTCGGCGTCGCTATCAGAACGTTCTCCACTCCCACCGGTCTCTATGGCTTCCCCCATTTGAAGACCCCCAAAGGCTTTCAACCTTTCGTCGATGATGCCATTCAAAGGTCTGGAGAACTCATTAGTTACATTTGTTCGAAAAGGCCAGCTGCTGAAGTAATGCGAGCAATGGATGAGATTTCTGATACTGTCTGCTCTGTTGTCGACTCTGCTGAATTGTGTAGGAATACCCACCCTGACAGGGAGTTTGTTGAGGAGGCCACCAAGGCATCGATGAAAATTAATGAATATCTACATTATCTGAACACAAATCATGATCTATATGATGCGGTGAAGAAAGCTGAGCAAGAATGTCATATGCTTTCTGAGGAAGCTCAAAGGGGAGTTAGAAACTTACGCGCCGACTTTGAAAGGGGTGGAATTCATCTTTGCCCTGAGAAATTAGATCGAGTGAACAAGCTAAATATTGAAATTTCTCAGCTATGCAGAGAGTACAATGAAAATATTGTAATGGACCCAGGAACTGTTGATATATATCCTTCATCTCGCATCCCCAAGAATCTGCATTATCTTGTAAAGCCTATCTATTGTTCAAAATCTTTAATAACCAAGGATTTATCAGGGTCCGGGGACACCCTAAAAGAGAAAGGATTTCGGATTACGACAAACCCACAAACTCTTACATCTGTACTACAATTTTCATCAGATGATGAGGTTAGGAAAATGGTATATATACGAGGAAATTCTGTGCCACATGCAAATGTTGATGTCCTCAAAAGGCTTATATCTGCACGACATGAGCTAGCTCAGATAATGGGGTCTAGATCTTATGCTGAATTTTCTGTTAAGCCTAACATGGCTGTATCACCAAAAGTCGTAACGTCATTTTTACTCGAAATGAGCAAGATGGTCCAGGCTAAGTCTATAGAGGAGCGTAAGTTAGTTATGAAATTCAAGAGAGAAAAATGCGGTCGAAGTGATGGAGATTTAAGGCCATGGGATGAGACCTATTACATGACAATGATGAAGTCCTCTTCATATAAATTGGATGCTTCGGTTGTAGGTTCATATTTTTCTCTGTCAAACTGTATTGAGGGTTTGAAGGTTCTGGTGCAGTCATTGTTTGGTGCAACCTTTCGTATCATCCCTCTAGCACCTGGTGAATCTTGGGATCCACATGTACTTAAACTGTCTCTTGATCATCCTGAAGAGGGTGACTTGGGATATCTCTACCTCGATTTGTACTCAAGAAAGGGAAAGTATCCTGGTTGTGCTCACTTTGCAATTAAAGGGGCTCGCAGAATTTCTCAAACAGAATACCAACTTCCAATTGTAGCTCTTGTTTGTAACTTTTCGGGTTCTCGGAATCCATCAGCTGTAAGGCTCAATCATTGGGAAGTAGAAACTCTATTTCATGAGTTTGGACATGCTCTTCATTCACTGCTTTCAAGAACGGACTACCAGCATTTTTCGGGCACCAGAACGGTTCTTGATTTTGCAGAAATACCATCCAACCTCTTTGAATACTATGCATGGGATTATCGAGTTTTGAAAAAATTTGCGAGACACCATTCAACTGGTGAAGAAATACCACAGAAGTTGGTTGAGTCAATGCAGGGTGCCAGAGATATGTTTGCTGCAACAGATCTGCAACGTCAGATCTTCTATGCTCTTGTTGACCAGACACTCTTTGGAGAGCAGCCATTCCCTCATGGTGATATTAGTTCTGTTGTTGCAAAACTGAAAAGAGAGCACACTAGTTGTGAACATGTGGAAGGCACACATTGGGAGGCCCGATTTAGTCATCTACTTAATTATGGTGCAGGTTATTATAGCTATTTGTATGCAAAGTGTTTTGCTGCAACCATATGGAAGAAGCTGTGCCAGGAGGATCCACTTTCACCCACTACAGGATTTGCTTTAAGAACAAAATTCTTACAGCATGGAGGAGCCAGAGAACCTGCTGCATTGTTGAATGATCTAGCAGGAGACGGGATATATAGGTATTGTGATGGAGGGATAATGCCTGATATTTCATGCCTATGTGATGAAATGAAGCTGTTTGAATAA

>Glyma04g13088.2   sequence type=CDS   gene model=Glyma04g13088   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGCAGCGATGTGGAGTGTTGTGATCAGAAGAAGCAGTTGGGAGATTCTCCGTCAGATTAAACGGAATATTCTTCTCGGCGTCGCTATCAGAACGTTCTCCACTCCCACCGGTCTCTATGGCTTCCCCCATTTGAAGACCCCCAAAGGCTTTCAACCTTTCGTCGATGATGCCATTCAAAGGTCTGGAGAACTCATTAGTTACATTTGTTCGAAAAGGCCAGCTGCTGAAGTAATGCGAGCAATGGATGAGATTTCTGATACTGTCTGCTCTGTTGTCGACTCTGCTGAATTGTGTAGGAATACCCACCCTGACAGGGAGTTTGTTGAGGAGGCCACCAAGGCATCGATGAAAATTAATGAATATCTACATTATCTGAACACAAATCATGATCTATATGATGCGGTGAAGAAAGCTGAGCAAGAATGTCATATGCTTTCTGAGGAAGCTCAAAGGGGAGTTAGAAACTTACGCGCCGACTTTGAAAGGGGTGGAATTCATCTTTGCCCTGAGAAATTAGATCGAGTGAACAAGCTAAATATTGAAATTTCTCAGCTATGCAGAGAGTACAATGAAAATATTGTAATGGACCCAGGAACTGTTGATATATATCCTTCATCTCGCATCCCCAAGAATCTGCATTATCTTGTAAAGCCTATCTATTGTTCAAAATCTTTAATAACCAAGGATTTATCAGGGTCCGGGGACACCCTAAAAGAGAAAGGATTTCGGATTACGACAAACCCACAAACTCTTACATCTGTACTACAATTTTCATCAGATGATGAGGTTAGGAAAATGGTATATATACGAGGAAATTCTGTGCCACATGCAAATGTTGATGTCCTCAAAAGGCTTATATCTGCACGACATGAGCTAGCTCAGATAATGGGGTCTAGATCTTATGCTGAATTTTCTGTTAAGCCTAACATGGCTGTATCACCAAAAGTCGTAACGTCATTTTTACTCGAAATGAGCAAGATGGTCCAGGCTAAGTCTATAGAGGAGCGTAAGTTAGTTATGAAATTCAAGAGAGAAAAATGCGGTCGAAGTGATGGAGATTTAAGGCCATGGGATGAGACCTATTACATGACAATGATGAAGTCCTCTTCATATAAATTGGATGCTTCGGTTGTAGGTTCATATTTTTCTCTGTCAAACTGTATTGAGGGTTTGAAGGTTCTGGTGCAGTCATTGTTTGGTGCAACCTTTCGTATCATCCCTCTAGCACCTGGTGAATCTTGGGATCCACATGTACTTAAACTGTCTCTTGATCATCCTGAAGAGGGTGACTTGGGATATCTCTACCTCGATTTGTACTCAAGAAAGGGAAAGTATCCTGGTTGTGCTCACTTTGCAATTAAAGGGGCTCGCAGAATTTCTCAAACAGAATACCAACTTCCAATTGTAGCTCTTGTTTGTAACTTTTCGGGTTCTCGGAATCCATCAGCTGTAAGGCTCAATCATTGGGAAGTAGAAACTCTATTTCATGAGTTTGGACATGCTCTTCATTCACTGCTTTCAAGAACGATACTATGCATGGGATTATCGAGTTTTGAAAAAATTTGCGAGACACCATTCAACTGGTGA
Predicted protein sequences of Glyma04g13088
>Glyma04g13088.1   sequence type=predicted peptide   gene model=Glyma04g13088   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAAMWSVVIRRSSWEILRQIKRNILLGVAIRTFSTPTGLYGFPHLKTPKGFQPFVDDAIQRSGELISYICSKRPAAEVMRAMDEISDTVCSVVDSAELCRNTHPDREFVEEATKASMKINEYLHYLNTNHDLYDAVKKAEQECHMLSEEAQRGVRNLRADFERGGIHLCPEKLDRVNKLNIEISQLCREYNENIVMDPGTVDIYPSSRIPKNLHYLVKPIYCSKSLITKDLSGSGDTLKEKGFRITTNPQTLTSVLQFSSDDEVRKMVYIRGNSVPHANVDVLKRLISARHELAQIMGSRSYAEFSVKPNMAVSPKVVTSFLLEMSKMVQAKSIEERKLVMKFKREKCGRSDGDLRPWDETYYMTMMKSSSYKLDASVVGSYFSLSNCIEGLKVLVQSLFGATFRIIPLAPGESWDPHVLKLSLDHPEEGDLGYLYLDLYSRKGKYPGCAHFAIKGARRISQTEYQLPIVALVCNFSGSRNPSAVRLNHWEVETLFHEFGHALHSLLSRTDYQHFSGTRTVLDFAEIPSNLFEYYAWDYRVLKKFARHHSTGEEIPQKLVESMQGARDMFAATDLQRQIFYALVDQTLFGEQPFPHGDISSVVAKLKREHTSCEHVEGTHWEARFSHLLNYGAGYYSYLYAKCFAATIWKKLCQEDPLSPTTGFALRTKFLQHGGAREPAALLNDLAGDGIYRYCDGGIMPDISCLCDEMKLFE*

>Glyma04g13088.2   sequence type=predicted peptide   gene model=Glyma04g13088   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAAMWSVVIRRSSWEILRQIKRNILLGVAIRTFSTPTGLYGFPHLKTPKGFQPFVDDAIQRSGELISYICSKRPAAEVMRAMDEISDTVCSVVDSAELCRNTHPDREFVEEATKASMKINEYLHYLNTNHDLYDAVKKAEQECHMLSEEAQRGVRNLRADFERGGIHLCPEKLDRVNKLNIEISQLCREYNENIVMDPGTVDIYPSSRIPKNLHYLVKPIYCSKSLITKDLSGSGDTLKEKGFRITTNPQTLTSVLQFSSDDEVRKMVYIRGNSVPHANVDVLKRLISARHELAQIMGSRSYAEFSVKPNMAVSPKVVTSFLLEMSKMVQAKSIEERKLVMKFKREKCGRSDGDLRPWDETYYMTMMKSSSYKLDASVVGSYFSLSNCIEGLKVLVQSLFGATFRIIPLAPGESWDPHVLKLSLDHPEEGDLGYLYLDLYSRKGKYPGCAHFAIKGARRISQTEYQLPIVALVCNFSGSRNPSAVRLNHWEVETLFHEFGHALHSLLSRTILCMGLSSFEKICETPFNW*






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