SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19770 | AT | Annotation by Michelle Graham. TAIR10: Vacuolar sorting protein 9 (VPS9) domain | chr3:6866916-6869114 FORWARD LENGTH=520 | SoyBase | E_val: 2.00E-103 | ISS |
| GO:0000919 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell plate assembly | SoyBase | N/A | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0042546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0048528 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic root development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005089 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Rho guanyl-nucleotide exchange factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR23101 | Panther | RAB GDP/GTP EXCHANGE FACTOR | JGI | ISS | |
| PTHR23101:SF25 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF02204 | PFAM | Vacuolar sorting protein 9 (VPS9) domain | JGI | ISS | |
| UniRef100_G7J0B1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rab5 GDP/GTP exchange factor n=1 Tax=Medicago truncatula RepID=G7J0B1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A3C4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A3C4 related cluster n=1 Tax=unknown RepID=UPI000233A3C4 | SoyBase | E_val: 0 | ISS |
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Glyma04g13010 not represented in the dataset |
Glyma04g13010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g116900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g13010.1 sequence type=CDS gene model=Glyma04g13010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGCCTCTTCCTCTACTTCAGTTTCAATCTTTCTTGACTTGGGATTCCCTGAACATGAACATGGACATGGAGGTATCAACGTCGTTCCATGATTTTCTCTATCGCATGCGACACCCTGCTTCCCTCGACCTCGTTCGATCCATCAAGAGCTTTATAGTATCATTTTCATTTCACCAACCAAAACCTGAAAATGATGGGAAAAGAGTACAAGACTTCTTTGTGTCAATGGAAGCTGCAATCAGAGATCATTCACTGTGGACTACTGCCTCCGAAGAAGACATTGATTGTGCAATGCAGGGTTTAGAGAAATATATAATGACTAAATTGTTCTCTCGAACATTCTCTGCTTCTGCTGAGGATGCAAAGATTGACAACGAAATCTCATCGAAAATATGCTTGCTCCAAACCTTTCTAAAGCCTGAACATTTGGATATACCACCAATTCTCCAAAATGAAGCCTTATGGCTGCTTGCAGAGAAAGAATTGCTGAAAATCAATGCCTTCAAAGCTCCTCATGAGAAACTCTTGAGCATTATGAATTGCTGCAGGATCATCAACAATCTGTTGCTCAATGCTGCAATGTCTGAGTATGTTCCAGCTGGGGCAGATGGCTTTCTCCCTGTGCTCATATATGTTACAATCAAGGCAAATCCTCCAAAGTTGCATTCTAACCTCAAATTCATCAAGTTGTACACAAGGCAAGCAAAACTCATCTCCGAAGCTGAATATTATTTCACAAATCTTGTGTCGGCTAAGACATTTATAGTTGACTTAAATGCCAAATCACTTTCAATGGACGAAATCAAATATAAGGAGAGCATGCAAGCAGCCAAGTTGACCAATAAAGTCACAAGTGAATTATCCGCTGCATGTCAAATGAGCCAGCAAGAGACGGACGATAGCAGTTGTTCAAAGAAAATGCACAACAAACTTGATGATACTGGAGTTTTGCTACATGGATCAAACTATCCTTACATGGAAGCAAAGAGCAAAGAGCTAACAGTTGGAGATGTGGACATGTTATTAAGTGATTACAAGGATTTAGTTGCTAAGTACACAATCCTGTGCAAAGCTATTGGTTGCCTTTCCACCGCAGAGAGAGAACCCCTCCTTCGTCATCTAGAAATGCAAGGACCAGAAACTCTACTTAATTTCACAGCACCGTCGGATCATCACAGACACAAGTGA
>Glyma04g13010.1 sequence type=predicted peptide gene model=Glyma04g13010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLPLPLLQFQSFLTWDSLNMNMDMEVSTSFHDFLYRMRHPASLDLVRSIKSFIVSFSFHQPKPENDGKRVQDFFVSMEAAIRDHSLWTTASEEDIDCAMQGLEKYIMTKLFSRTFSASAEDAKIDNEISSKICLLQTFLKPEHLDIPPILQNEALWLLAEKELLKINAFKAPHEKLLSIMNCCRIINNLLLNAAMSEYVPAGADGFLPVLIYVTIKANPPKLHSNLKFIKLYTRQAKLISEAEYYFTNLVSAKTFIVDLNAKSLSMDEIKYKESMQAAKLTNKVTSELSAACQMSQQETDDSSCSKKMHNKLDDTGVLLHGSNYPYMEAKSKELTVGDVDMLLSDYKDLVAKYTILCKAIGCLSTAEREPLLRHLEMQGPETLLNFTAPSDHHRHK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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