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Report for Sequence Feature Glyma04g13010

Feature Type:gene_model
Chromosome:Gm04
Start:12612070
stop:12616597
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g13010
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G19770AT Annotation by Michelle Graham. TAIR10: Vacuolar sorting protein 9 (VPS9) domain | chr3:6866916-6869114 FORWARD LENGTH=520 SoyBaseE_val: 2.00E-103ISS
GO:0000919GO-bp Annotation by Michelle Graham. GO Biological Process: cell plate assembly SoyBaseN/AISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0042546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis SoyBaseN/AISS
GO:0048528GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic root development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005089GO-mf Annotation by Michelle Graham. GO Molecular Function: Rho guanyl-nucleotide exchange factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR23101Panther RAB GDP/GTP EXCHANGE FACTOR JGI ISS
PTHR23101:SF25Panther SUBFAMILY NOT NAMED JGI ISS
PF02204PFAM Vacuolar sorting protein 9 (VPS9) domain JGI ISS
UniRef100_G7J0B1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Rab5 GDP/GTP exchange factor n=1 Tax=Medicago truncatula RepID=G7J0B1_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233A3C4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A3C4 related cluster n=1 Tax=unknown RepID=UPI000233A3C4 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g13010
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g13010 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g116900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g13010
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g13010
>Glyma04g13010.1   sequence type=CDS   gene model=Glyma04g13010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCCTCTTCCTCTACTTCAGTTTCAATCTTTCTTGACTTGGGATTCCCTGAACATGAACATGGACATGGAGGTATCAACGTCGTTCCATGATTTTCTCTATCGCATGCGACACCCTGCTTCCCTCGACCTCGTTCGATCCATCAAGAGCTTTATAGTATCATTTTCATTTCACCAACCAAAACCTGAAAATGATGGGAAAAGAGTACAAGACTTCTTTGTGTCAATGGAAGCTGCAATCAGAGATCATTCACTGTGGACTACTGCCTCCGAAGAAGACATTGATTGTGCAATGCAGGGTTTAGAGAAATATATAATGACTAAATTGTTCTCTCGAACATTCTCTGCTTCTGCTGAGGATGCAAAGATTGACAACGAAATCTCATCGAAAATATGCTTGCTCCAAACCTTTCTAAAGCCTGAACATTTGGATATACCACCAATTCTCCAAAATGAAGCCTTATGGCTGCTTGCAGAGAAAGAATTGCTGAAAATCAATGCCTTCAAAGCTCCTCATGAGAAACTCTTGAGCATTATGAATTGCTGCAGGATCATCAACAATCTGTTGCTCAATGCTGCAATGTCTGAGTATGTTCCAGCTGGGGCAGATGGCTTTCTCCCTGTGCTCATATATGTTACAATCAAGGCAAATCCTCCAAAGTTGCATTCTAACCTCAAATTCATCAAGTTGTACACAAGGCAAGCAAAACTCATCTCCGAAGCTGAATATTATTTCACAAATCTTGTGTCGGCTAAGACATTTATAGTTGACTTAAATGCCAAATCACTTTCAATGGACGAAATCAAATATAAGGAGAGCATGCAAGCAGCCAAGTTGACCAATAAAGTCACAAGTGAATTATCCGCTGCATGTCAAATGAGCCAGCAAGAGACGGACGATAGCAGTTGTTCAAAGAAAATGCACAACAAACTTGATGATACTGGAGTTTTGCTACATGGATCAAACTATCCTTACATGGAAGCAAAGAGCAAAGAGCTAACAGTTGGAGATGTGGACATGTTATTAAGTGATTACAAGGATTTAGTTGCTAAGTACACAATCCTGTGCAAAGCTATTGGTTGCCTTTCCACCGCAGAGAGAGAACCCCTCCTTCGTCATCTAGAAATGCAAGGACCAGAAACTCTACTTAATTTCACAGCACCGTCGGATCATCACAGACACAAGTGA
Predicted protein sequences of Glyma04g13010
>Glyma04g13010.1   sequence type=predicted peptide   gene model=Glyma04g13010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPLPLLQFQSFLTWDSLNMNMDMEVSTSFHDFLYRMRHPASLDLVRSIKSFIVSFSFHQPKPENDGKRVQDFFVSMEAAIRDHSLWTTASEEDIDCAMQGLEKYIMTKLFSRTFSASAEDAKIDNEISSKICLLQTFLKPEHLDIPPILQNEALWLLAEKELLKINAFKAPHEKLLSIMNCCRIINNLLLNAAMSEYVPAGADGFLPVLIYVTIKANPPKLHSNLKFIKLYTRQAKLISEAEYYFTNLVSAKTFIVDLNAKSLSMDEIKYKESMQAAKLTNKVTSELSAACQMSQQETDDSSCSKKMHNKLDDTGVLLHGSNYPYMEAKSKELTVGDVDMLLSDYKDLVAKYTILCKAIGCLSTAEREPLLRHLEMQGPETLLNFTAPSDHHRHK*






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