Glyma04g12950 - SoyBase

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Report for Sequence Feature Glyma04g12950

Feature Type:	gene_model
Chromosome:	Gm04
Start:	12398969
stop:	12405138
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G17390	AT	Annotation by Michelle Graham. TAIR10: ankyrin repeat-containing 2B \| chr2:7555870-7557743 FORWARD LENGTH=344	SoyBase	E_val: 2.00E-149	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG4214	KOG	Myotrophin and similar proteins	JGI		ISS
PTHR24193	Panther	FAMILY NOT NAMED	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_B9RKV9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat domain protein, putative n=1 Tax=Ricinus communis RepID=B9RKV9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_C6TDJ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TDJ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12950

Paralog	Evidence	Comments
Glyma06g47830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g116500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g12950

Limit To All Plant Sequences

>Glyma04g12950.2   sequence type=transcript   gene model=Glyma04g12950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTATCGCTAAAGGTTATAAATAAATAAATATATAAATAAAAAAAGGAAAAAGGGTTTTGTTTTCATTTCGTTCTTTTTTTTCCTTCCAAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAGCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGAACAATAAGGGGGTAATTGCTTTACACGTTGTGGTTCCTCCTGATTCCTTCCATCTCATTTGCTTCTGGAAAAAAAGTTTGCATTTGTGTGTAGGCATGACAAAGAATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCATCTAAAGATTCTCCAGCAGCACAAAGAGCTACTACAGCTACTTCTGGACCTGCAACTGGTTTTCCAGGCAACCCTTTTGATTTCTCTGCAATGTCTGGCCTGCTCAATGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCATTCAACCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGAGCTCCACAGGATGCTATGCCTAGCTTTGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAAGACCAGCTTGAAGAAAGAATGACACGCATCAAGGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGACTGGTGGTCCTGCTGCTATGATGAGGTACTGGAATGATGAGGAGGTTTTGCGGAAGTTGGGACAAGCCATGGGTCTTGCAAATTCTGGAGATGTAGGTGCCTCTGCTGAAAATTCTGGGGCAGATGAGACAGAAGATTTGGGAAATGAAGATGAATCAATTGTTCATCATACTGCTAGTGTTGGTGATGTGGAGGGCTTGAAAAATGCACTAGCCGCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGTGAGGTGAAATGTGCTCAAGTTCTCCTTGAGGCTGGAGCAAAAGTGGATGCTTTGGATAAGAATAAGAACACTGCTCTCCATTATGCAGCTGGTTATGGCAGAAAGGAATGTGTGGCCCTTCTCCTTGAAAATGGTGCTGCAGTTACTCTCCAGAATATGGATGGTAAAACTCCAATAGATGTTGCGAAGCTAAACAATCAAAATGAAGTCCTGAAGCTACTTGAGAAAGATGCTTTTCTGTAATTGCAATGCATGATGCCATGCTGTCACCAACAAGCAAAGGGGAAACTGAGGGGAAGAAGGCACGACTTTGTTATTTATCTTTTGGTTTCTTCCAACCGTTGTGTGTTAAACTAAATTGATTAACGTTGTTGGATGTGAGTCACCATAGAATTTGTTATCTATGTTCTTGTAATGCATTTATTGTCACACTGCATGATTTTGAAGATTAGTGCCGTCATGATTTTATTCATGCTTCAATTTTACTTGTACTACATTGCTTCGTGGCAAAATTCTGGTTCAAATGGTATCGTACAAGAATATAAGGCGAGTCGAGAGCTGAAAAGGTTTGGAAGATTTTGATCTAGGGGACTAAATTGCCAACAAAT

>Glyma04g12950.3   sequence type=transcript   gene model=Glyma04g12950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTATCGCTAAAGGTTATAAATAAATAAATATATAAATAAAAAAAGGAAAAAGGGTTTTGTTTTCATTTCGTTCTTTTTTTTCCTTCCAAACTCACTCATCTCACACTTCCTCTTCCTCTCTCACTCAGATTCAGCAATTTTCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCATCTAAAGATTCTCCAGCAGCACAAAGAGCTACTACAGCTACTTCTGGACCTGCAACTGGTTTTCCAGGCAACCCTTTTGATTTCTCTGCAATGTCTGGCCTGCTCAATGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCATTCAACCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGAGCTCCACAGGATGCTATGCCTAGCTTTGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAAGACCAGCTTGAAGAAAGAATGACACGCATCAAGGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGACTGGTGGTCCTGCTGCTATGATGAGGTACTGGAATGATGAGGAGGTTTTGCGGAAGTTGGGACAAGCCATGGGTCTTGCAAATTCTGGAGATGTAGGTGCCTCTGCTGAAAATTCTGGGGCAGATGAGACAGAAGATTTGGGAAATGAAGATGAATCAATTGTTCATCATACTGCTAGTGTTGGTGATGTGGAGGGCTTGAAAAATGCACTAGCCGCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGTGAGGCTTGTCAAACATGTTAAAATATGAGAGTCAATTTCTAAAGCATTGCTGAAATTTGGGGCGAGTATGGGTTGGACTTGATGACAACCATTGGAAGCATCTGAAATTTCCAACTGTCTGATTTTTCTTGGGTAATGGAGAAGCTACCGGCTGCAGCTGATTCTAGGAAAAAAACAATGGAAAATGACAATGATGAATTGGATGGATTGGAAATGGAGAAGAAAGCACAAGAGCAAAGAGGGAAGCAGTTGGAAATGAGGAAACAAAGTGCAAGTTGATGATATTAGGCTAGTTTGGAATCATCTGCCTTTTAGTTTTTTTTTTTTTTTCATTTGCAGGCAGATACTCTCTTGGTGAATAATCTGCTTTAGATGTTGGTTGATACTGGATATGTTCTTACACTTTTGACTTCGGAGCAATTTTTCACATGTTTTGAAAAGGGACGAGTGTAACACTTATAACTATTTGTTTACATGGTTCTCTGATGGGATCTGG

Coding sequences of Glyma04g12950

Limit To All Plant Sequences

>Glyma04g12950.1   sequence type=CDS   gene model=Glyma04g12950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCATCTAAAGATTCTCCAGCAGCACAAAGAGCTACTACAGCTACTTCTGGACCTGCAACTGGTTTTCCAGGCAACCCTTTTGATTTCTCTGCAATGTCTGGCCTGCTCAATGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCATTCAACCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGAGCTCCACAGGATGCTATGCCTAGCTTTGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAAGACCAGCTTGAAGAAAGAATGACACGCATCAAGGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGACTGGTGGTCCTGCTGCTATGATGAGGTACTGGAATGATGAGGAGGTTTTGCGGAAGTTGGGACAAGCCATGGGTCTTGCAAATTCTGGAGATGTAGGTGCCTCTGCTGAAAATTCTGGGGCAGATGAGACAGAAGATTTGGGAAATGAAGATGAATCAATTGTTCATCATACTGCTAGTGTTGGTGATGTGGAGGGCTTGAAAAATGCACTAGCCGCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGTGAGGTGAAATGTGCTCAAGTTCTCCTTGAGGCTGGAGCAAAAGTGGATGCTTTGGATAAGAATAAGAACACTGCTCTCCATTATGCAGCTGGTTATGGCAGAAAGGAATGTGTGGCCCTTCTCCTTGAAAATGGTGCTGCAGTTACTCTCCAGAATATGGATGGTAAAACTCCAATAGATGTTGCGAAGCTAAACAATCAAAATGAAGTCCTGAAGCTACTTGAGAAAGATGCTTTTCTGTAA

>Glyma04g12950.2   sequence type=CDS   gene model=Glyma04g12950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAAGAATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCATCTAAAGATTCTCCAGCAGCACAAAGAGCTACTACAGCTACTTCTGGACCTGCAACTGGTTTTCCAGGCAACCCTTTTGATTTCTCTGCAATGTCTGGCCTGCTCAATGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCATTCAACCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGAGCTCCACAGGATGCTATGCCTAGCTTTGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAAGACCAGCTTGAAGAAAGAATGACACGCATCAAGGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGACTGGTGGTCCTGCTGCTATGATGAGGTACTGGAATGATGAGGAGGTTTTGCGGAAGTTGGGACAAGCCATGGGTCTTGCAAATTCTGGAGATGTAGGTGCCTCTGCTGAAAATTCTGGGGCAGATGAGACAGAAGATTTGGGAAATGAAGATGAATCAATTGTTCATCATACTGCTAGTGTTGGTGATGTGGAGGGCTTGAAAAATGCACTAGCCGCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGTGAGGTGAAATGTGCTCAAGTTCTCCTTGAGGCTGGAGCAAAAGTGGATGCTTTGGATAAGAATAAGAACACTGCTCTCCATTATGCAGCTGGTTATGGCAGAAAGGAATGTGTGGCCCTTCTCCTTGAAAATGGTGCTGCAGTTACTCTCCAGAATATGGATGGTAAAACTCCAATAGATGTTGCGAAGCTAAACAATCAAAATGAAGTCCTGAAGCTACTTGAGAAAGATGCTTTTCTGTAA

>Glyma04g12950.3   sequence type=CDS   gene model=Glyma04g12950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCATCTAAAGATTCTCCAGCAGCACAAAGAGCTACTACAGCTACTTCTGGACCTGCAACTGGTTTTCCAGGCAACCCTTTTGATTTCTCTGCAATGTCTGGCCTGCTCAATGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCATTCAACCAGATGGCTGAGCAGCTTCAGAAAACTTTTCAAGGAGCTCCACAGGATGCTATGCCTAGCTTTGATAATCAACAATATTTTTCAACCATGCAACAGGTTATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGGATCCATCTATGTCTGCCATGCTTGAAAGTTTTTCTAATCCATCAAATAAAGACCAGCTTGAAGAAAGAATGACACGCATCAAGGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGACTGGTGGTCCTGCTGCTATGATGAGGTACTGGAATGATGAGGAGGTTTTGCGGAAGTTGGGACAAGCCATGGGTCTTGCAAATTCTGGAGATGTAGGTGCCTCTGCTGAAAATTCTGGGGCAGATGAGACAGAAGATTTGGGAAATGAAGATGAATCAATTGTTCATCATACTGCTAGTGTTGGTGATGTGGAGGGCTTGAAAAATGCACTAGCCGCTGGTGCTGACAAGGATGAAGAAGATTCAGAGGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGTGAGGCTTGTCAAACATGTTAA

Predicted protein sequences of Glyma04g12950

Limit To All Plant Sequences

>Glyma04g12950.1   sequence type=predicted peptide   gene model=Glyma04g12950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDSKKDFPADDKAGTAENKASKDETSSKDSPAAQRATTATSGPATGFPGNPFDFSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGAPQDAMPSFDNQQYFSTMQQVMQNPNFMTMAERLGNALMQDPSMSAMLESFSNPSNKDQLEERMTRIKEDPSLKHILEEIETGGPAAMMRYWNDEEVLRKLGQAMGLANSGDVGASAENSGADETEDLGNEDESIVHHTASVGDVEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQVLLEAGAKVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQNEVLKLLEKDAFL*

>Glyma04g12950.2   sequence type=predicted peptide   gene model=Glyma04g12950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKNDKAGTAENKASKDETSSKDSPAAQRATTATSGPATGFPGNPFDFSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGAPQDAMPSFDNQQYFSTMQQVMQNPNFMTMAERLGNALMQDPSMSAMLESFSNPSNKDQLEERMTRIKEDPSLKHILEEIETGGPAAMMRYWNDEEVLRKLGQAMGLANSGDVGASAENSGADETEDLGNEDESIVHHTASVGDVEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQVLLEAGAKVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQNEVLKLLEKDAFL*

>Glyma04g12950.3   sequence type=predicted peptide   gene model=Glyma04g12950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDSKKDFPADDKAGTAENKASKDETSSKDSPAAQRATTATSGPATGFPGNPFDFSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGAPQDAMPSFDNQQYFSTMQQVMQNPNFMTMAERLGNALMQDPSMSAMLESFSNPSNKDQLEERMTRIKEDPSLKHILEEIETGGPAAMMRYWNDEEVLRKLGQAMGLANSGDVGASAENSGADETEDLGNEDESIVHHTASVGDVEGLKNALAAGADKDEEDSEGRTALHFACGYGEACQTC*

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