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Report for Sequence Feature Glyma04g12780

Feature Type:gene_model
Chromosome:Gm04
Start:12107221
stop:12108705
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g12780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12840AT Annotation by Michelle Graham. TAIR10: vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) | chr1:4375584-4378220 FORWARD LENGTH=375 SoyBaseE_val: 3.00E-26ISS
GO:0000902GO-bp Annotation by Michelle Graham. GO Biological Process: cell morphogenesis SoyBaseN/AISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009809GO-bp Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process SoyBaseN/AISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0015991GO-bp Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016051GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process SoyBaseN/AISS
GO:0030243GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process SoyBaseN/AISS
GO:0043255GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of carbohydrate biosynthetic process SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0000221GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar proton-transporting V-type ATPase, V1 domain SoyBaseN/AISS
GO:0000325GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0046961GO-mf Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism SoyBaseN/AISS
UniRef100_B9RH03UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar ATP synthase subunit C, putative n=1 Tax=Ricinus communis RepID=B9RH03_RICCO SoyBaseE_val: 3.00E-26ISS
UniRef100_I1MNN4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNN4_SOYBN SoyBaseE_val: 8.00E-32ISS

Expression Patterns of Glyma04g12780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g12780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g115400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g12780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g12780
>Glyma04g12780.1   sequence type=CDS   gene model=Glyma04g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGACGAGGTATAGGGTAGTGTCTCTCCCTATTCAAAATTCCGCATCCACTCTCTGGAACAAATTGCAGGAACAAATCTCCGAACACTCCTTCGACACTCTTCTCTACAGAAACCCTAGACTCCCTCCTTTCCCTCAGCAACAATATCGTCAAGTGTCGCACATGATCAGGCGGCAGATTGAGGAGCTAGAGAGTGTCTGGCATGGTGATCAGTGGTTTGATGGTGGATGGAGTCCCCGATTTAGTGTGCTTTTATGGTGGATGCAAGAGATCATCGATGGAATTCACGGTCAGGTGGCAAAGAATGAGGATGATCTCAAGGTTCATGTTTCCGAGTATAACAATATCTGCACTGACTTAAATGACCTATTTGCTATTCATAGAAAGATTGGCTCTTTGGCTATGAAACATTGA
Predicted protein sequences of Glyma04g12780
>Glyma04g12780.1   sequence type=predicted peptide   gene model=Glyma04g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTRYRVVSLPIQNSASTLWNKLQEQISEHSFDTLLYRNPRLPPFPQQQYRQVSHMIRRQIEELESVWHGDQWFDGGWSPRFSVLLWWMQEIIDGIHGQVAKNEDDLKVHVSEYNNICTDLNDLFAIHRKIGSLAMKH*






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