SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G33406 | AT | Annotation by Michelle Graham. TAIR10: hAT dimerisation domain-containing protein / transposase-related | chr5:12676126-12678403 REVERSE LENGTH=509 | SoyBase | E_val: 9.00E-119 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PTHR10775 | Panther | AC-LIKE TRANSPOSASE-RELATED | JGI | ISS | |
| PTHR10775:SF75 | Panther | HAT DIMERISATION DOMAIN-CONTAINING PROTEIN | JGI | ISS | |
| PF04937 | PFAM | Protein of unknown function (DUF 659) | JGI | ISS | |
| PF05699 | PFAM | hAT family dimerisation domain | JGI | ISS | |
| UniRef100_Q2QPA8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HAT family dimerisation domain containing protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QPA8_ORYSJ | SoyBase | E_val: 1.00E-129 | ISS |
| UniRef100_UPI000233D774 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D774 related cluster n=1 Tax=unknown RepID=UPI000233D774 | SoyBase | E_val: 0 | ISS |
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Glyma04g12742 not represented in the dataset |
Glyma04g12742 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g114900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g12742.1 sequence type=CDS gene model=Glyma04g12742 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGAAATAACCAGAGCCAAACAACACCTGATTAGGAAGTCGGGTAACGTTGCAGCTTGCAAGAAAACTCCACCAAATGTAGTCGAAGAGTTGAAGGAATATATGACTATAAAAAAAAGTGGGACCACTTACAGTACTTTTGGCAGTGGTAATATGACAAATATAAGAGATTTTGAATTTGGTGAACCAATTGGATGTGATGGAAGTGAAGAAGATGAGTTTGCAGACTCTTGTAATGCTGCTGCAAGTGCAAAGACAAAGTGTGGAACTAAAAAAGGACCAATGGACAAATTTTGTAAGAATCCAGAAAATGCAATCAATCGGAGAAAAATGAAGATGTTGAGGCAAATGAACATTAGAGAGTCAATGGATAAGAATGAAGTATTGAAGGTACATCAACATATTGCTCGCTTTTGGTATCAAGCAGGTTTGTCATTCAATCTCATTAAATTGAAAAGCTTTGAGAATATGGTTGCAGCCATTGGTCAATATGGGCCACAGTTGCCCATTCCTAGCTATCGTGACATCAGAGTTCCACTCCTCAAGAAGGAAGTTGAATATACTGAAAATTTGATGAAAGGCCATAGGGAGCAATGGGTCAAGTATGGTTGTACTATTATGTCCGATGCATGGACTGATCGGAAACAAAGATGCATCATTAATTTTTTGATTAACTCTCAAGCTGGTACCATGTTTTTGAAGTCTGTTGATGACTCTGATTTTGTAAAGGCAGGTGAAAAGCTTTTTGAGTTGCTTGATGCCATTGTGGAGGAAGTTGGAGAAGAGAATGTTGTTCAAGTTGTAACCGATAAAAGGAGCAACTATGTTTTAGCGGGTAAGTTGTTGGAGGAGAAAAGGAAACATATTTATTGGACTCCTTGTGCAGCTCATTGTATTGATTTGATACTTGATATTGGGAAGCTTCCCTTGATAATGAAGACAATTAGAAGGGCAATTAATCTAGTTGGGTTTATCTATGCCCATTCTAGTACCTTAAGTTTGCTGAGAAATTTTACAAACAAGAGGGAATTGGTGAGACATGCTATTACTAGATTTGCCACTTCTTATCTAACCTTGAAAAGGCTCCCCAAAGAGAAAGCAAATATTAGAAAGATGTTTACTTCTGATGAATGGACCTTGAACAAGCTATCTAAGGAGCCTAAGGAAAAAGAAGCTTCAAAGGTAGTTCTCATGCCTTCTTTTTGGAATAGTGTGGTTTACACTCTTAAAGTCATGGCTCCACTTGTGAAAGTGCTTCGTCTTGTGGATGGTGAAAAGAAACCAGCCATGGGCTATATTTATGAAGCAATGGACAAGGCAAAAGAAACAATTATCAAGTCTTTTAACAACAATGAAAGCAAGTACAAAGATGTGTTTGCAATCATTGATAAAAGATGGAATTGTCAGCTTCATAGGCCATTGTATGCAGCTGCCCACTTCTTAAATCCATTGTTCTTTTATGACAACACTGACTTGGAGTTTTATTTTGAGGTCACCAATGGTTTGTTTGAGTGCATTAAGAAGTTGATTCCACAATTTGATGTGCAACAGAAAATTCTAACCGAGTTGCATCTTTACAAGATTGGTGCTGAACACTTTGGTTCTGACTTTGCAATGGCTCAAAGAAAAACTCATTCTCCTACATATTGGTGGCGAATGTTTGGGTCACAAACTCCAAATTTGCAAAAGCTAGCTATTAAAATTTTAAGTTTGACTTGCAGTGCTTCAGGATGTGAAAGAAATTGGAGTGTGTTTGAGCAAATTCATTCCAAAGAAAGAAATAGGGTTGAGCACAAGAGGTTGCATGATTTGGTGTTTGTCAAATACAACCAACAATTGAAGCAAAGATATAATGCAAGAGATGAAATTGATCCAATTTCTCTTAATGATATTGATGTGTGCAATGAATGGCTCGTGGGAGAGATGGATCAAGATGATGATAATGATGCTGGAAATGATTTGGTATTTGAAGATGATGATGCTCTAAATTGGGCAACTGTGTATCAGGCTTCGGGGGTTGGAGAGTGTAGGATGTATACTAGGCGGAAAAAGCAAAAAACAACAAGTGTTGCTGCTGCCCAAACTTCTAAAAAACAGGCAATGGTTGTTGGATCTTCATCAAGGAAGCAAAAAGCAGTCCAAGAAAATGATGAAGATCTAGATTTTGAGGAGAATATTGATCTTGAATCTAAAGAAGAAGAAATCATGGTCAATTTTGAGGCGTCTGATGGGGAAGAGGGAGAGGGAGATGCTCCATTACCATATGATAACAACAAAGATGATTATGTTGGGATTGGAGAAGATGATTAG
>Glyma04g12742.1 sequence type=predicted peptide gene model=Glyma04g12742 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEITRAKQHLIRKSGNVAACKKTPPNVVEELKEYMTIKKSGTTYSTFGSGNMTNIRDFEFGEPIGCDGSEEDEFADSCNAAASAKTKCGTKKGPMDKFCKNPENAINRRKMKMLRQMNIRESMDKNEVLKVHQHIARFWYQAGLSFNLIKLKSFENMVAAIGQYGPQLPIPSYRDIRVPLLKKEVEYTENLMKGHREQWVKYGCTIMSDAWTDRKQRCIINFLINSQAGTMFLKSVDDSDFVKAGEKLFELLDAIVEEVGEENVVQVVTDKRSNYVLAGKLLEEKRKHIYWTPCAAHCIDLILDIGKLPLIMKTIRRAINLVGFIYAHSSTLSLLRNFTNKRELVRHAITRFATSYLTLKRLPKEKANIRKMFTSDEWTLNKLSKEPKEKEASKVVLMPSFWNSVVYTLKVMAPLVKVLRLVDGEKKPAMGYIYEAMDKAKETIIKSFNNNESKYKDVFAIIDKRWNCQLHRPLYAAAHFLNPLFFYDNTDLEFYFEVTNGLFECIKKLIPQFDVQQKILTELHLYKIGAEHFGSDFAMAQRKTHSPTYWWRMFGSQTPNLQKLAIKILSLTCSASGCERNWSVFEQIHSKERNRVEHKRLHDLVFVKYNQQLKQRYNARDEIDPISLNDIDVCNEWLVGEMDQDDDNDAGNDLVFEDDDALNWATVYQASGVGECRMYTRRKKQKTTSVAAAQTSKKQAMVVGSSSRKQKAVQENDEDLDFEENIDLESKEEEIMVNFEASDGEEGEGDAPLPYDNNKDDYVGIGEDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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