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Report for Sequence Feature Glyma04g12729

Feature Type:gene_model
Chromosome:Gm04
Start:12025642
stop:12053154
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g12729
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G55620AT Annotation by Michelle Graham. TAIR10: chloride channel F | chr1:20787338-20790990 REVERSE LENGTH=781 SoyBaseE_val: 0ISS
GO:0006821GO-bp Annotation by Michelle Graham. GO Biological Process: chloride transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005216GO-mf Annotation by Michelle Graham. GO Molecular Function: ion channel activity SoyBaseN/AISS
GO:0005247GO-mf Annotation by Michelle Graham. GO Molecular Function: chloride transport SoyBaseN/AISS
KOG0475 KOG Cl- channel CLC-3 and related proteins (CLC superfamily) JGI ISS
PTHR11689Panther CHLORIDE CHANNEL JGI ISS
PTHR11689:SF49Panther SUBFAMILY NOT NAMED JGI ISS
PF00571PFAM CBS domain JGI ISS
PF00654PFAM Voltage gated chloride channel JGI ISS
UniRef100_B9ST82UniRef Annotation by Michelle Graham. Most informative UniRef hit: Voltage-gated clc-type chloride channel, putative n=1 Tax=Ricinus communis RepID=B9ST82_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002339C30UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339C30 related cluster n=1 Tax=unknown RepID=UPI0002339C30 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g12729
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g12729 not represented in the dataset
Glyma04g12729 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12729
ParalogEvidenceComments
Glyma06g47910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12729 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g114800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g12729
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g12729
>Glyma04g12729.1   sequence type=CDS   gene model=Glyma04g12729   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGAGAGCGATCAGCGTCGTCTTCTCGGGGCGTCCGAGGATGACGTGGAGGTTCGAGGCTCGGAATTGGCGTTGGCGGTCGTCAATGGCAGCAGTGGCAACAACAACAACAACAGAGGTTTCAGGGATTTGCTAAGGTTGTCGGGTCACCGACACAGTTTCAAGCACATTGACAAAGAAGGGGATAGGGATAGGGATAGGGATAGGGATAGAGATAGAAGAGATCAGAATCGGCATCTCCACGATGTGGATCTTGATTCTTCTGTTGATGTGCTTGGGGACAGTGCACCTCCTGAATGGGCGTTGCTTCTCATTGGTTGCCTCATTGGACTCACCACTGGCCTCTTTGTGGCACTTTTTAATAAAGGGGTGCATATAATACATGAATGGGTATGGGCTGGCACTCCAGTTGAGGGTGCTGCCTGGCTTCGTATTCAGAGATTGGCTGATACATGGCATCGAATCCTTTTAATACCTGTCACTGGAGGAGTCATTGTCGGCATGATGTGTGGTTTACTGGAAATACTGGACCAAATAAAGCAATCCACTTCCTCTCAAACACAAGGTTTTGATTTTCTTGCAGGAATCTTTCCAACAATAAAGGCTATCCAGGCTGCAGTTACTTTAGGTACGGGCTGTTCATTGGGCCCCGAAGGTCCTAGTGTTGATATTGGGAAGTCATGTGCCAACGGATTTTCACTAACGATGGAACACAACAGAGAGAGGAAAATAGCACTTGTTGCGGCTGGTGCAGCAGCTGGTATTTCTTCAGGCTTCAATGCACCAGTTGCTGGTTGTTTCTTTGCTATCGAAACTGTGCTGAGGCCTCTTCGTGCAGAGAACTCTCCCCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATCTCGTCAACTGTATCTAATGTTTTACAGGGGATCCAATCTGCTTTCACAATACCCGAGTATGATTTGAAATCTGCTGCTGAGCTACCTTTATACCTGATATTGGGAATGCTATGTGGTGTTATAAGTGTGGCCCTGACTCGTTTGGTTGCTTGGTTCACCAAATTATTTAAGACTATTCAGGATAAGTTTGGCATTCCTACTGTGGTCTGCCCTGCTTTAGGTGGCTTTGGAGCTGGGATCATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGAAGAAATTCTACGCACTGGAAAGAGTGCTTCAGCTCCTGGAATATGGCTTCTGGCTCAATTGGTATTTGCTAAAGTTATTGCAACAGCTCTTTGCAAGGGATCTGGGCTAGTAGGTGGTCTTTATGCACCGAGTTTAATGATAGGTGCTGCAGCTGGTGCTGTATTTGGAGGCTTTTCTGCTGAAGTTATTAATTCAGCAATTCCTGGAAATACCGCTGTTGCTCAGCCCCCAGCATATGCTCTGGTTGGAATGGCTGCTACATTAGCATCTGCTTGTTCTGTTCCTTTGACTTCAGTTCTACTTCTGTTTGAGCTGACAAAAGATTATAGGATACTGCTTCCACTCATGGGAGCTGTTGGATTGGCAATATGGGTTCCCTCAGTGACAAACCAGGTGAAGGAGAGTCAGACACCTGATTCAAGTAAATCAGCAAGAGGATATTCTCCAATTTCACATGCTGGAGATGATAATGAGGATAACTGGAGACAAGCCAATGATGGGAATGATTTAGAACTCAGTATTGTTGGAGATGGCACAGATCTTGAACCAATTGATACGGAACTGCTTCTGGACAATCTTCAGGTTTCCCGGGCCATGTCAAAACAATATCTGAAGGTTTTGTCATCTTTAACTCTGAAAGATGCAATGAAATGCATGCATGACAGCCAGCAGAAGTGTGTGCTGGTAGTTGATAAAGAAGATTTTCTAGAAGGAATATTGACATGTGGTGACGTTAAAAGGTGTCTGTCCCAGAAGTCTAATGACACTTTGAAGAGCGATTCAGGGATTTTGGATGCAAACACATGCCTCGTTTCCTCTGTTTGTACTCGAGGGATGACCTATCGTGGACAAGAGCGAGGAATTTTAACCTGCTATCCAAATACTAGTTTGGCTATGGCCAAAGAGTTGATGGAGGCCAAGGGCATTAAGCAATTACCAGTGGTTAAACGTGGTGGAGATCACAGTAGAGAAATGAAGAGGAGAATTGTTGGTCTTCTTCATTATGATGCACTATGGCAATTCCTC
Predicted protein sequences of Glyma04g12729
>Glyma04g12729.1   sequence type=predicted peptide   gene model=Glyma04g12729   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSESDQRRLLGASEDDVEVRGSELALAVVNGSSGNNNNNRGFRDLLRLSGHRHSFKHIDKEGDRDRDRDRDRDRRDQNRHLHDVDLDSSVDVLGDSAPPEWALLLIGCLIGLTTGLFVALFNKGVHIIHEWVWAGTPVEGAAWLRIQRLADTWHRILLIPVTGGVIVGMMCGLLEILDQIKQSTSSQTQGFDFLAGIFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLTMEHNRERKIALVAAGAAAGISSGFNAPVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGIQSAFTIPEYDLKSAAELPLYLILGMLCGVISVALTRLVAWFTKLFKTIQDKFGIPTVVCPALGGFGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLAQLVFAKVIATALCKGSGLVGGLYAPSLMIGAAAGAVFGGFSAEVINSAIPGNTAVAQPPAYALVGMAATLASACSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTNQVKESQTPDSSKSARGYSPISHAGDDNEDNWRQANDGNDLELSIVGDGTDLEPIDTELLLDNLQVSRAMSKQYLKVLSSLTLKDAMKCMHDSQQKCVLVVDKEDFLEGILTCGDVKRCLSQKSNDTLKSDSGILDANTCLVSSVCTRGMTYRGQERGILTCYPNTSLAMAKELMEAKGIKQLPVVKRGGDHSREMKRRIVGLLHYDALWQFL






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