Glyma04g12675 - SoyBase

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Report for Sequence Feature Glyma04g12675

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11957075
stop:	11965048
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12675

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26450	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 614 Blast hits to 492 proteins in 137 species: Archae - 0; Bacteria - 94; Metazoa - 255; Fungi - 76; Plants - 69; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). \| chr4:13362556-13364920 FORWARD LENGTH=708	SoyBase	E_val: 2.00E-29	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_Q01JR8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0160I14.5 protein n=3 Tax=Oryza sativa RepID=Q01JR8_ORYSA	SoyBase	E_val: 2.00E-06	ISS
UniRef100_UPI000233A3B9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A3B9 related cluster n=1 Tax=unknown RepID=UPI000233A3B9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12675

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g12675 not represented in the dataset	Glyma04g12675 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12675

Paralog	Evidence	Comments
Glyma06g47920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12675 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g114300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12675

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g12675

Limit To All Plant Sequences

>Glyma04g12675.1   sequence type=CDS   gene model=Glyma04g12675   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCGAGACAACGGAGTCCGCGAGGGTTTTACGCGTCGGAGTACCGCCAGCAGCGTGACGGGGGGCTGGGAAGAGGCCGGAGAGGCGGAGGTGCCTGTGGCAGCGACATTTTCGTCGAGGCAGGGCGACTCGCGGCAGAGTATTTGGTCTCCCAGGGGCAGCTGCCGCCCAACGCGCTGCCGCCGCCCAAGTGGCAGAACCACAAGACTCCGGCAGAGGGCGGGCGGCAGTCGGCGCTGGCGCGGCTCGGGAGTGCTGACGGGAGGAGGAAATTGGGTGGGTTTGATGAGTTCGGGCAGAAGGGGGGGAGGAGGAGGGGGAGTTTCAGCAGGAGCAATGGGATGGATTGGGGGAGAGAGTATAGGAGGAACGGTTCTTGGTCTGATAGGTTTCGCGGAGGTGCCGTGGATGTTAGGGATGGTGAGGATGATGATTATGAGAGTGGTGGATTTAGTGTTAGACACCAGGATGAGGAGGATCAGCACCAGTACCAGCAGCAGCAGCATCAGAATAGTGTTGATGATGCTTCCATGAAATCAAATTCGAATTTGAATGAATTTGCGCCGAGGAGTGAGGATGGTGGTGATTTGAATGATAAGGATGGGGATAAGGAGAGGGTGAATGCTGAATTGATGGGGGTGAAGCAGAGTGGTATAGGGAAAGATGTGAGTGATGTGGATATGGAGGTTGGTGTTGGAAATGATTTGGAGAGTGTGAGCGTTGGGGTTAAGGAGGTGAAGGATGGGAGTGGTGGCGATGATGATAGTGAGAGATTGAGGAATGTGTCTGATCAGTGGAGTGATCAGGAGAATAGTAGCTCTGGCGGGGTTGTTGCTGATTTGGTTTCTTTGTGCAAGTCTGTTAAGGTGCCCACCAGGACGCGCTCTTCGGTTACGCGCAAGAATTTGAAGGCTGGGAATAATGGAGATAGGAGTGGGACTGCACAAGATGTTGGGGATCTTCAAGGAGCTGAGGAAGTGGTGCCTGAAAATGAGTCTGTTAAAGGCTCCTCATCGGGTGATTTGCTAGGTGAGAAAAGTTATGATATAGTATATGTTGACGTAGATGTTGCCGAGGTAGAACCTGTTCATGCTACTGAGGATGTGAAAGAATTAGATGCTGTGTGTAAAGCCGAGGAAGTTCTATCTTTAGGATGCCAATCTGGTCAGGATAGAGGTTTTATGCAGGATACCAACCAAGAGTCTGGTGCTACACTACCGGGGTATGGAGGTTGCAGTTCCTTGGCTGAGGAACATGGTGAAAAACGTGTTGCCGAAAATGATGATGATGTGAGGGAGGACAACAAGAAGCTGAGAGAATGGGTGCCTTCCCTTGTTCCTAAGACTGGGGGTGGGGGGTACTTTCTGCATAGTAACCCAATTGAAGTGAAAGAGAGCTCAGGAGAAGATGAAATTTCACATATTGACAAAGTGACTATAGCTTCTGATCAGGGGAGACTGATGAGTAGTGGTTCTCAGTTCACAGAAGGAGATAGACCCTTTCTTCAATGTTCAGAGGAGAAGCCTTCTTTGCCGAGTTCGTTTAGAACTTGTGATCTGAATCTCATTGAAGCGTCTGAAGTGCATGAAAATCATGTTGATCATCCAGTTCTGCTGTACCCCCCTGCGGTTTCTGAAACAAAGAAAGCTGTGCCAATTGACATAGATCTGACCATGAGTCATGCTAGTGTATCAGGGAAATTCAATACTCATGCAACAAATGGCAAAGAGATTGAAGTAATTGATTTAGAAAATGATGATTCCATTCAAGAAGAGAAGTCAATCAACAGTATGGATAGAAAGACAGAGACTATGTTTCCTGGCCTTGAAGGTTTTTCCAACCATGCTCAAAATGCTGCTGACATGCATGATGTTCAGGATGGATATGGGCTTATGATATCAGAGTTGCTTGGGCCAGATTTCCCTAACTGTACTTCAGTACCTGGTGACATAAACTCTGTGCACAATGAAATGAGCCTTCATGGTGGAACGGGGACACTTGCTGAGGATGATTCCATATATATGTCACTTGGAGAACTAAGTATGCCAGATTTTTATTAA

Predicted protein sequences of Glyma04g12675

Limit To All Plant Sequences

>Glyma04g12675.1   sequence type=predicted peptide   gene model=Glyma04g12675   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQARQRSPRGFYASEYRQQRDGGLGRGRRGGGACGSDIFVEAGRLAAEYLVSQGQLPPNALPPPKWQNHKTPAEGGRQSALARLGSADGRRKLGGFDEFGQKGGRRRGSFSRSNGMDWGREYRRNGSWSDRFRGGAVDVRDGEDDDYESGGFSVRHQDEEDQHQYQQQQHQNSVDDASMKSNSNLNEFAPRSEDGGDLNDKDGDKERVNAELMGVKQSGIGKDVSDVDMEVGVGNDLESVSVGVKEVKDGSGGDDDSERLRNVSDQWSDQENSSSGGVVADLVSLCKSVKVPTRTRSSVTRKNLKAGNNGDRSGTAQDVGDLQGAEEVVPENESVKGSSSGDLLGEKSYDIVYVDVDVAEVEPVHATEDVKELDAVCKAEEVLSLGCQSGQDRGFMQDTNQESGATLPGYGGCSSLAEEHGEKRVAENDDDVREDNKKLREWVPSLVPKTGGGGYFLHSNPIEVKESSGEDEISHIDKVTIASDQGRLMSSGSQFTEGDRPFLQCSEEKPSLPSSFRTCDLNLIEASEVHENHVDHPVLLYPPAVSETKKAVPIDIDLTMSHASVSGKFNTHATNGKEIEVIDLENDDSIQEEKSINSMDRKTETMFPGLEGFSNHAQNAADMHDVQDGYGLMISELLGPDFPNCTSVPGDINSVHNEMSLHGGTGTLAEDDSIYMSLGELSMPDFY*

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