Glyma04g12630 - SoyBase

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Report for Sequence Feature Glyma04g12630

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11882725
stop:	11886650
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26455	AT	Annotation by Michelle Graham. TAIR10: WPP domain interacting protein 1 \| chr4:13365737-13367384 FORWARD LENGTH=489	SoyBase	E_val: 8.00E-50	ISS
UniRef100_G7J0C1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WPP domain-interacting protein n=1 Tax=Medicago truncatula RepID=G7J0C1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KFV3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KFV3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12630

Paralog	Evidence	Comments
Glyma06g47971	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g113700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g12630

Limit To All Plant Sequences

>Glyma04g12630.2   sequence type=CDS   gene model=Glyma04g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGGAAGCGAATCCGTGGAAGAGAACGAAGTGAATCATGATGGGAATGGAAACGGTGGTTCTTATGATGACGAGAAGATTGGGTTGGGTTTGGAGGGAAATTCGGATGTCAACGGTTCGGATCAAAAGGGAACGGTTGGCGAAGTTGAAGTGGGTAGTGCGGAAGGTGTGAATTCCAAAGGGACACCAACAAAGGGGTTTGGGTTGAAGAAATGGAAGAGAATTCGGAGGAATGTTGTTAAGGATCCAAATTCGAGTGTTGATTCGGGTAAAGTCTTGAAGAGGGGCTTGTCTGGCAATGCCAATTTGAGTGAAAGCCAGCCTTTTCTGCGCGATGTTAAGGAGAAGAATGAAGGATCTTCAAACATGTTTGGGAATGTAGTGTTCTCTGATGGCAATGTGATCCATGGTTCAAGTTCGGATTCTAGATATGCACTTGGATCTGGTTTTGTTGTTGGGACTGATTCTGAGAATAGCGAGGATCAGAGTAGCAAGTCTTCTACAGCGGCTAGTGAGCCCAAGTTGAGGCAAGAGAAAAGCCGTAGTAAGAATGTGAATTCAAAGCATTTAGCTAACTCGGCTCAACGAGTTCAACCGGGAAAGGGACGAACTGAAGGCAGTAAGAAACCAGGAGGAGGTGGAAGAGTGAAAATTGAGAAGGAAAATTCTTTTTCTAGTTTGGAATCTGATTCAAGAAGCTCCAACTTTAAGCAAGGTGTTTTTTCGGTTACTAGTAATGGAAAGCATACTAGTAGGCCAAATGTTTACGATGGAGTTAATAGTGGTGAAGCACACACTAATGAACATTTCACTGAGGGTGTTGAGGCTGGTTATGGTAACGAAAATAATTTGGGTACAAATTTGTCTTGGGATGTTACAGAAGAAAAAAGTGTGAACAACCAATCTTCAGCCGTTGAAGATCCTATAATTGAATCGGTTAGTTGCCTTCAGGCTGTCCAGGAGGCCCTTCAAGAAGAACTCCAGAAATTCAGGGAGATTGGGATTGAAGCTATTTCACCAGATGATGACTCAGCTAAGTGTAGCAGTGTATCTGCTGGTACTACTATTGATCTTGGACTTAATAAATCAAGCCAATCTGGTCAGTCTGGTGCAGAAGAAATTAGACAAACTGCTTCAAGTTCCTCAGATCCTCAGGTATTGAGCCTGACACAAAATATAAATATTTTGGAAAGCAAGTTGGAGGATTTACAGGGTGTGCTTGCTCTGAAGGACTCTAGGATTGCTGAACTCGAAGCATCCTTGAGTAGTGTTAAGATTTCTAGGGAAGAATCTGCAAGCACCATAGATTTGTCCGAGAAAAAATGTGAAGGGGTTGAGTCGGAGCTCGAGGGCCTTTTCAAGCTAAGGATTGAAGCTGAGGTTGAATACCTAGCCATCTCAAAGGTAATGCAGAACATGAAGGGTGGGGCAGGTATCCAACAGACATTATTGGAAGAACAAGAGAAACTGTCTGAAAATCAAGCGCAGATTCTCGACAAAGTTGTAGATGCAGAGAGTAAGGCTTCAGTGCTGAAGAACAAAACAGAAGAGTTGGAAAAATATTGTGGTGATAGTGTAGTAGTTGAGGAGTCTTTTGTGCTGCAGAGAAGGGTATGTAAGATGTCATTTTATCTTTTCATACAGTTTATGTTTTTAGTTTTGATCTTTTGGCTTTACATGTCACAGTTATCGCACAATTCTGGGATGGTTGTGCCCACTTAG

Predicted protein sequences of Glyma04g12630

Limit To All Plant Sequences

>Glyma04g12630.2   sequence type=predicted peptide   gene model=Glyma04g12630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLGSESVEENEVNHDGNGNGGSYDDEKIGLGLEGNSDVNGSDQKGTVGEVEVGSAEGVNSKGTPTKGFGLKKWKRIRRNVVKDPNSSVDSGKVLKRGLSGNANLSESQPFLRDVKEKNEGSSNMFGNVVFSDGNVIHGSSSDSRYALGSGFVVGTDSENSEDQSSKSSTAASEPKLRQEKSRSKNVNSKHLANSAQRVQPGKGRTEGSKKPGGGGRVKIEKENSFSSLESDSRSSNFKQGVFSVTSNGKHTSRPNVYDGVNSGEAHTNEHFTEGVEAGYGNENNLGTNLSWDVTEEKSVNNQSSAVEDPIIESVSCLQAVQEALQEELQKFREIGIEAISPDDDSAKCSSVSAGTTIDLGLNKSSQSGQSGAEEIRQTASSSSDPQVLSLTQNINILESKLEDLQGVLALKDSRIAELEASLSSVKISREESASTIDLSEKKCEGVESELEGLFKLRIEAEVEYLAISKVMQNMKGGAGIQQTLLEEQEKLSENQAQILDKVVDAESKASVLKNKTEELEKYCGDSVVVEESFVLQRRVCKMSFYLFIQFMFLVLIFWLYMSQLSHNSGMVVPT*

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