SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G20860 | AT | Annotation by Michelle Graham. TAIR10: FAD-binding Berberine family protein | chr4:11172726-11174318 FORWARD LENGTH=530 | SoyBase | E_val: 3.00E-112 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008762 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016614 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| PTHR11748 | Panther | D-LACTATE DEHYDROGENASE | JGI | ISS | |
| PTHR11748:SF29 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF08031 | PFAM | Berberine and berberine like | JGI | ISS | |
| UniRef100_Q2PMD5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: FAD-linked oxidoreductase 1 n=1 Tax=Glycine max RepID=Q2PMD5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A3B6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A3B6 related cluster n=1 Tax=unknown RepID=UPI000233A3B6 | SoyBase | E_val: 0 | ISS |
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Glyma04g12620 not represented in the dataset |
Glyma04g12620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g113600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g12620.2 sequence type=CDS gene model=Glyma04g12620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCAGAAATTCAAGCAGCTATTCAATGCAGCAAAGAACTTGGGCTGCAGATCAGAGTCAGAAGTGGCGGCCATGATTATGAAGGGCTATCATATCTTTGAACCTGTGAATGGAAAGATTCATGATCGAAAATCAATGGGGGAAGATGTTTTCTGGGCCATAAGAGGAGGTAGTGCTACTAGTTTTGGAGTCATTCATGCATGGAAGATCAAGTTGGTTAGAGTTCCACCTATTGTTACAGGGTTCAACATTCACAAAACACTAGAAGAAGGAGCCACCAAGCTCATTCACAGGTGGCAACACATAGCACATGAATTGCATGAGGATCTTTTCATTAGAATAGTTGCTCAAAATAGTGGTGACAAATCAAAAACATTCCAAGCAACCTTCGAATTTCTCTTCCTTGGAAGACACGACAAGTTAATCCAACTGATGAATGAGAGTTTCCCAGAATTGGGATTGCAGGCCAAAGACTGCACTGAAATGAGCTGGATTCAATCAGTTTTATTCTTTGCTGGATACAACAAAGAGGACCCTCCAGAACTCTTGCTTAACAGAACTACCACGTATAAAAGCTCTTTCAAGGCCAAGTCTGACTTTGTAAAGGAGCCAATACCAAAAACTGGCTTAGAAGGAATTTGGAAAATGCTTCTAGAAGAAGAAACGTTAGCCTTGCTGTTAATGGAACCATATGGTGGTAGAATGAATGAAATTTCAGAATCTGAAATCCCTTTTCCCCACAGAAAGGGAAACTTGTACAACATACAATACTTGGTCAAATACATGACTCCTTATGTCTCAAAGTCTCCAAGAGCTGCCTATTTCAACTATAAGGATCTTGATTTAGGCAAAAACAAGTATCACAACACAAGCTACTCAAAAGCTAGTGTTTGGGGCAAGAAGTACTTTAAGGGAAACTTTAGAAGATTGACACAAATTAAGACAAAGTTTGACCCTCAAAATTTTTTCAGCAATGAACAGAGTATTTCTCTCCTGCATACCCATCCTTCTTAG
>Glyma04g12620.2 sequence type=predicted peptide gene model=Glyma04g12620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNQKFKQLFNAAKNLGCRSESEVAAMIMKGYHIFEPVNGKIHDRKSMGEDVFWAIRGGSATSFGVIHAWKIKLVRVPPIVTGFNIHKTLEEGATKLIHRWQHIAHELHEDLFIRIVAQNSGDKSKTFQATFEFLFLGRHDKLIQLMNESFPELGLQAKDCTEMSWIQSVLFFAGYNKEDPPELLLNRTTTYKSSFKAKSDFVKEPIPKTGLEGIWKMLLEEETLALLLMEPYGGRMNEISESEIPFPHRKGNLYNIQYLVKYMTPYVSKSPRAAYFNYKDLDLGKNKYHNTSYSKASVWGKKYFKGNFRRLTQIKTKFDPQNFFSNEQSISLLHTHPS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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