Glyma04g12500 - SoyBase

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Report for Sequence Feature Glyma04g12500

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11593174
stop:	11598183
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56190	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:22742654-22744909 FORWARD LENGTH=447	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
PTHR22847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22847:SF188	Panther	WD-40 REPEAT FAMILY PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7J0E1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein-like protein n=1 Tax=Medicago truncatula RepID=G7J0E1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JVM9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVM9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g12500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g112700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g12500

Limit To All Plant Sequences

>Glyma04g12500.2   sequence type=transcript   gene model=Glyma04g12500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAACTTCCATAACAACGATTTTTGGTTGTTTTGTTTTAATACTGTTATGCAATTATCGCCAAATTCTAGATGAATTTGAGAAATTATGGTAAAAAAAGGTGCCCTTGATTTTTATTATTTTTTTGTATAAAAAATTTTGGGCCTTATTCTATCGAAACCCTAATTTCTGGGTTGTCTATTGGTTAAGATGAATTTTGGGGGAAAAAACTGTTCAAGTTTTCCTTTTTTTTAAATGCCCTTGATTTCATTTGTATGATTTTGGAGCGTATTTTTATTGGAACCCTAATTTCAGGGTTGTGTAAAATTATTATTTTCTGTTTTAGTATCTGCATTCTTTTCAATGGGTTCATAGAAATAGCTAGTTATTGCCCATGCCAATCGTTGTTATATGGTTTTCCAATTATCGAGACATAACTAGGTATAAAATTGAATAATATTTTAACTCTCTGGAAACTATTGGCAGGTTAGACTGGTTACTGATTTTTTGTTTTGTTTACTTGTGGTTGTTTATTTATTTTTTAACTTTTACATTTTGGACACAATTGTTGTTGCTCACCCGGGACTATTGTTTGCATCTGATTTTCTAATTTTTCCAATTCTTGTTATTATAGGTTCTAATTAGTAGGGCAGAACATGTCCCGTCACCAAGGAGGTAATGCTGAAGATATGGCAGATGAATTTGAAATGGAAGATGTAGAAGACGACATGGATGATGAATCTATTGATAGAGAAAGGGGTGGTGTAGAGTCTGACATAGATGATTATGATCACTCGAGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGATATCCAGGGAATTCCTTGGGATAGCCTTAACATCACTAGAGAAAGATATCGGCAAACTAGGCTTGAGCAATACAAGAATTATGAAAATATCCCTGGTTCAGGGGACAAGTCGGGGAAGGATTGTAAGAATACCAAAAAAGGATACTCCTTTTATGACTTCAGAAAAAATTCAAGATCAGTAAAGTCTTCAATTCTTCATTTTCAGTTGAGGAATTTGGTATGGGCTACATCAAAGCATGATGTATACCTTATTTCACAGTTTTCAATAATGCATTGGTCCTCTTTGACTTGCAAAAGTTCAGAAGTACTTAATGTTTCGGGACATGTTGCACCATCAGAGAGACATCCTGAAAGTTTATTAGAAGGTTTTACTCACACTCAAGTCAGTACACTTGCAGTGAAGGAGAAGCTTCTAGTTGTTGGAGGATTTCAGGGTGAACTTATTTTTAAGCACCTAGATCGACCTGGTGTTAGCTTTTGCACGAGAACAACTTATGATGATAATGCTATCACCAATGCCATTGAGATTTATGATTGTCCTAGTGGTGCAGTTCATTTCACAGCCGCTAATAATGATAGTGGAGTGAGAGACTTTGATATGGAGAAATTTCAGCTTTCTAAGCATTTTTGTTTTCCCTGGCCAGTGAATCATACTTCTCTCAGCCCGAACGGTAAGCTACTACTAATTGTTGGAGACAATCCTGAATGTATGTTAGTGGACTCCCAAAATGGAAAGACAATTGTTCCCTTATCTGGGCACTTTGATTATTCATTTGCATCATCATGGCATCCTGATGGTGTGACCTTTGCCACTGGAAACCAGGACAAAACCTGCCAGATTTGGGACTTGCGGAATTTATCCAAGTCAGTGGCTGTGCTGCAGAGCAACATTGGAGCCATCCGTTCAATCAAGTATACTTCAGATGGCCGGTATATGGCTGTTGCAGAGCCTGCAGATTTTGTACATGTGTATGATGTAAAAAGTGGGTATGAGAATGAACAGGAAATTGATTTCTTCGGTGAGATATCAGGCATATCTTTCAGTCCGGACACTGAGTCCCTGTTCATTGGGGTCTGGGATCGCACTTATGGTAGCCTTCTTGAGTATGGCCGGCGACGGTATTATGCATACCTTGATTCACTTACTTGAATATTCAAGGAACAAAAAATGACATGGTAGCTGAGGTGCACTTTAATAGCCTGCTTTAATATCTGATTGAGGTAGGTTGGCTTATGTATAAATTGAGTATCCTGCTACTGTTCTCAATTTGTTTTATACTGGTAGGGTGTGTTTATATCAGTCTGTGGAAAGCGAGAGGGAGTGTACAGGAGGCTAGAAGGCAATGATAGTGCAGATGGGGTGGAAAGTAAAAAATGCTGAGTATCAGTATGTTATTTACAGTGTCTATCTGTGCAAACAGATTATGGAGAGAACATATAAATTATGATGTTCTTTGATAGGGAAAATGAGTTTTGCTCATTGAGGATATTTAGTTTCCTTTTGTTTTCTTGCAAAAATAATAATGGACACTTAAAATTTGGATGGGTTGTATTATCAAATTATACATGAATAACTAATGATGACTAAGCTGTGATAAATAGGGACATTTAAAAAAGTTATTTCAATGTAAAATAATTTAGCGATTATTTTTTAGAGATTTAAAG

Coding sequences of Glyma04g12500

Limit To All Plant Sequences

>Glyma04g12500.1   sequence type=CDS   gene model=Glyma04g12500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCGTCACCAAGGAGGTAATGCTGAAGATATGGCAGATGAATTTGAAATGGAAGATGTAGAAGACGACATGGATGATGAATCTATTGATAGAGAAAGGGGTGGTGTAGAGTCTGACATAGATGATTATGATCACTCGAGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGATATCCAGGGAATTCCTTGGGATAGCCTTAACATCACTAGAGAAAGATATCGGCAAACTAGGCTTGAGCAATACAAGAATTATGAAAATATCCCTGGTTCAGGGGACAAGTCGGGGAAGGATTGTAAGAATACCAAAAAAGGATACTCCTTTTATGACTTCAGAAAAAATTCAAGATCAGTAAAGTCTTCAATTCTTCATTTTCAGTTGAGGAATTTGGTATGGGCTACATCAAAGCATGATGTATACCTTATTTCACAGTTTTCAATAATGCATTGGTCCTCTTTGACTTGCAAAAGTTCAGAAGTACTTAATGTTTCGGGACATGTTGCACCATCAGAGAGACATCCTGAAAGTTTATTAGAAGGTTTTACTCACACTCAAGTCAGTACACTTGCAGTGAAGGAGAAGCTTCTAGTTGTTGGAGGATTTCAGGGTGAACTTATTTTTAAGCACCTAGATCGACCTGGTGTTAGCTTTTGCACGAGAACAACTTATGATGATAATGCTATCACCAATGCCATTGAGATTTATGATTGTCCTAGTGGTGCAGTTCATTTCACAGCCGCTAATAATGATAGTGGAGTGAGAGACTTTGATATGGAGAAATTTCAGCTTTCTAAGCATTTTTGTTTTCCCTGGCCAGTGAATCATACTTCTCTCAGCCCGAACGGTAAGCTACTACTAATTGTTGGAGACAATCCTGAATGTATGTTAGTGGACTCCCAAAATGGAAAGACAATTGTTCCCTTATCTGGGCACTTTGATTATTCATTTGCATCATCATGGCATCCTGATGGTGTGACCTTTGCCACTGGAAACCAGGACAAAACCTGCCAGATTTGGGACTTGCGGAATTTATCCAAGTCAGTGGCTGTGCTGCAGAGCAACATTGGAGCCATCCGTTCAATCAAGTATACTTCAGATGGCCGGTATATGGCTGTTGCAGAGCCTGCAGATTTTGTACATGTGTATGATGTAAAAAGTGGGTATGAGAATGAACAGGAAATTGATTTCTTCGGTGAGATATCAGGCATATCTTTCAGTCCGGACACTGAGTCCCTGTTCATTGGGGTCTGGGATCGCACTTATGGTAGCCTTCTTGAGTATGGCCGGCGACGGTATTATGCATACCTTGATTCACTTACTTGA

>Glyma04g12500.2   sequence type=CDS   gene model=Glyma04g12500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCGTCACCAAGGAGGTAATGCTGAAGATATGGCAGATGAATTTGAAATGGAAGATGTAGAAGACGACATGGATGATGAATCTATTGATAGAGAAAGGGGTGGTGTAGAGTCTGACATAGATGATTATGATCACTCGAGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGATATCCAGGGAATTCCTTGGGATAGCCTTAACATCACTAGAGAAAGATATCGGCAAACTAGGCTTGAGCAATACAAGAATTATGAAAATATCCCTGGTTCAGGGGACAAGTCGGGGAAGGATTGTAAGAATACCAAAAAAGGATACTCCTTTTATGACTTCAGAAAAAATTCAAGATCAGTAAAGTCTTCAATTCTTCATTTTCAGTTGAGGAATTTGGTATGGGCTACATCAAAGCATGATGTATACCTTATTTCACAGTTTTCAATAATGCATTGGTCCTCTTTGACTTGCAAAAGTTCAGAAGTACTTAATGTTTCGGGACATGTTGCACCATCAGAGAGACATCCTGAAAGTTTATTAGAAGGTTTTACTCACACTCAAGTCAGTACACTTGCAGTGAAGGAGAAGCTTCTAGTTGTTGGAGGATTTCAGGGTGAACTTATTTTTAAGCACCTAGATCGACCTGGTGTTAGCTTTTGCACGAGAACAACTTATGATGATAATGCTATCACCAATGCCATTGAGATTTATGATTGTCCTAGTGGTGCAGTTCATTTCACAGCCGCTAATAATGATAGTGGAGTGAGAGACTTTGATATGGAGAAATTTCAGCTTTCTAAGCATTTTTGTTTTCCCTGGCCAGTGAATCATACTTCTCTCAGCCCGAACGGTAAGCTACTACTAATTGTTGGAGACAATCCTGAATGTATGTTAGTGGACTCCCAAAATGGAAAGACAATTGTTCCCTTATCTGGGCACTTTGATTATTCATTTGCATCATCATGGCATCCTGATGGTGTGACCTTTGCCACTGGAAACCAGGACAAAACCTGCCAGATTTGGGACTTGCGGAATTTATCCAAGTCAGTGGCTGTGCTGCAGAGCAACATTGGAGCCATCCGTTCAATCAAGTATACTTCAGATGGCCGGTATATGGCTGTTGCAGAGCCTGCAGATTTTGTACATGTGTATGATGTAAAAAGTGGGTATGAGAATGAACAGGAAATTGATTTCTTCGGTGAGATATCAGGCATATCTTTCAGTCCGGACACTGAGTCCCTGTTCATTGGGGTCTGGGATCGCACTTATGGTAGCCTTCTTGAGTATGGCCGGCGACGGTATTATGCATACCTTGATTCACTTACTTGA

Predicted protein sequences of Glyma04g12500

Limit To All Plant Sequences

>Glyma04g12500.1   sequence type=predicted peptide   gene model=Glyma04g12500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRHQGGNAEDMADEFEMEDVEDDMDDESIDRERGGVESDIDDYDHSSGKGVDTTAAQARRGQDIQGIPWDSLNITRERYRQTRLEQYKNYENIPGSGDKSGKDCKNTKKGYSFYDFRKNSRSVKSSILHFQLRNLVWATSKHDVYLISQFSIMHWSSLTCKSSEVLNVSGHVAPSERHPESLLEGFTHTQVSTLAVKEKLLVVGGFQGELIFKHLDRPGVSFCTRTTYDDNAITNAIEIYDCPSGAVHFTAANNDSGVRDFDMEKFQLSKHFCFPWPVNHTSLSPNGKLLLIVGDNPECMLVDSQNGKTIVPLSGHFDYSFASSWHPDGVTFATGNQDKTCQIWDLRNLSKSVAVLQSNIGAIRSIKYTSDGRYMAVAEPADFVHVYDVKSGYENEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRRRYYAYLDSLT*

>Glyma04g12500.2   sequence type=predicted peptide   gene model=Glyma04g12500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRHQGGNAEDMADEFEMEDVEDDMDDESIDRERGGVESDIDDYDHSSGKGVDTTAAQARRGQDIQGIPWDSLNITRERYRQTRLEQYKNYENIPGSGDKSGKDCKNTKKGYSFYDFRKNSRSVKSSILHFQLRNLVWATSKHDVYLISQFSIMHWSSLTCKSSEVLNVSGHVAPSERHPESLLEGFTHTQVSTLAVKEKLLVVGGFQGELIFKHLDRPGVSFCTRTTYDDNAITNAIEIYDCPSGAVHFTAANNDSGVRDFDMEKFQLSKHFCFPWPVNHTSLSPNGKLLLIVGDNPECMLVDSQNGKTIVPLSGHFDYSFASSWHPDGVTFATGNQDKTCQIWDLRNLSKSVAVLQSNIGAIRSIKYTSDGRYMAVAEPADFVHVYDVKSGYENEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGRRRYYAYLDSLT*

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