Glyma04g12490 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma04g12490): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma04g12490): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma04g12490

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11561279
stop:	11571255
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56180	AT	Annotation by Michelle Graham. TAIR10: actin-related protein 8 \| chr5:22737539-22740986 REVERSE LENGTH=471	SoyBase	E_val: 0	ISS
GO:0030029	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005200	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton	SoyBase	N/A	ISS
KOG0676	KOG	Actin and related proteins	JGI		ISS
PTHR11937	Panther	ACTIN	JGI		ISS
PTHR11937:SF18	Panther	ACTIN-RELATED	JGI		ISS
PF00022	PFAM	Actin	JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_B9T0K2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Actin, macronuclear, putative n=1 Tax=Ricinus communis RepID=B9T0K2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JVM7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVM7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g12490 not represented in the dataset	Glyma04g12490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g12490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g112600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g12490

Limit To All Plant Sequences

>Glyma04g12490.2   sequence type=transcript   gene model=Glyma04g12490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAGGATTCAAACAGAACAGAGAACATTGGGTGGTGTTGTGGCGTTTGGTGAGTTGAGTTCATTCTCAACATGTCGATGCTGCTCAGGAAGGTGTGGGAAAGGGTGTTATGGAGATCTGATTCTTCAACGTCAGCATCAGCATCAGCATCATCTTCATCATCATCATCACCACCAGAAGTGGCATGTTCTGACATGGGCGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCACATTCTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCTTGTGTCTGATAACAGACTTTGGATTCACTTTCTTCAGACCCATCAGGCTGAGCCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCGCCCTTTGCTGGCCATTGGCCCCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACTGGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATATCCATCAGGGCGTTCAGCAACATTTTTGGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTGCCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAATTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAATTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAGGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACGTGTCCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGATTGTTGTGATACAAAATTTATTTCCTCAATTATGCACCCTCATCCAAAGAGGCAACAACAGAAGATGTGAATTTTAGCAACTGCTTTTGTATGTATAAGTATATTATGATTTCCTTCTTGAAACGAAGCCTATAGTTAACATTCAGGTTGTTAAGAATAATGTAATAAGATTCAAGACTAAACCACAAGTGTGAAGAAACTGTTAATAATATAGTTGAAGAGCAAAACCACAACGTGAGAGGTTTTTTGTAATTAGAAAAATGCCTAGACATTGGAATAATGGAATCCATCTCTGGTTCTTCCATTCAATTTTATGAAATGAGATGGTCCTTTTAAGAATGCCATAAACTTCGAAGATGGCTTACTCTACGAAGTTTAATTTTTCACCTTGAGTTTGGTTATTAGGTCTTTTTTTTGTCTATAGTTGAGGATGACAATTTTTTAATGAACCGAAAACATTATGTCTGCAATGGTTTTACAACTGAACCAAGCAGCACTTCATGGTCACGCCCACCCGAGAAAAGGATCATCATCATTTTATATTTTATGCAATGGAAGGAACAGTAAAGTTGTATACAATGCAGAACAACAGTTTGATGAAGATGGAAAATTATCACTTTCATTTGAG

Coding sequences of Glyma04g12490

Limit To All Plant Sequences

>Glyma04g12490.1   sequence type=CDS   gene model=Glyma04g12490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATGCTGCTCAGGAAGGTGTGGGAAAGGGTGTTATGGAGATCTGATTCTTCAACGTCAGCATCAGCATCAGCATCATCTTCATCATCATCATCACCACCAGAAGTGGCATGTTCTGACATGGGCGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCACATTCTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCTTGTGTCTGATAACAGACTTTGGATTCACTTTCTTCAGACCCATCAGGCTGAGCCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCGCCCTTTGCTGGCCATTGGCCCCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACTGGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATATCCATCAGGGCGTTCAGCAACATTTTTGGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTGCCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAATTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAATTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAGGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACGTGTCCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATGTGAGTCATACTACCTGTGATACATACTCAAATTTAGTTTGCTGTATATGCATTCTATTTTGGGTAGTGATTATGGCACCGTTGAGAATTATCCACTCAGTGTCCACTCCTCTCACACGGTTTATACACGTGTAA

>Glyma04g12490.2   sequence type=CDS   gene model=Glyma04g12490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATGCTGCTCAGGAAGGTGTGGGAAAGGGTGTTATGGAGATCTGATTCTTCAACGTCAGCATCAGCATCAGCATCATCTTCATCATCATCATCACCACCAGAAGTGGCATGTTCTGACATGGGCGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCACATTCTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCTTGTGTCTGATAACAGACTTTGGATTCACTTTCTTCAGACCCATCAGGCTGAGCCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCGCCCTTTGCTGGCCATTGGCCCCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACTGGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATATCCATCAGGGCGTTCAGCAACATTTTTGGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTGCCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAATTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAATTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAGGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACGTGTCCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGA

Predicted protein sequences of Glyma04g12490

Limit To All Plant Sequences

>Glyma04g12490.1   sequence type=predicted peptide   gene model=Glyma04g12490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLLRKVWERVLWRSDSSTSASASASSSSSSSPPEVACSDMGELELLPSDILMHILRLLGPKEAAKLSVVCKALRSLVSDNRLWIHFLQTHQAEPSGDSVFFAETTLSYGYPLPPFAGHWPQLSFKHIYGQRALVPGSIIIDGGSGYCKFGWSKYAYPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYDDTESAKASRQQLKEAIYASLFDMNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLSFQSLYTVRTLKENLCYVALDYEAELLKDTKASFEAAGEGWFTLSKGRFQTAEILFQPHLAGVQAMGLHQAIALCVEHCHSADLACDSDWYKTIVLSGGTACLPGLAERIEKELHALLPPYVSNGIRVIPPPYGADTPWFGAKIVGNVSHTTCDTYSNLVCCICILFWVVIMAPLRIIHSVSTPLTRFIHV*

>Glyma04g12490.2   sequence type=predicted peptide   gene model=Glyma04g12490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMLLRKVWERVLWRSDSSTSASASASSSSSSSPPEVACSDMGELELLPSDILMHILRLLGPKEAAKLSVVCKALRSLVSDNRLWIHFLQTHQAEPSGDSVFFAETTLSYGYPLPPFAGHWPQLSFKHIYGQRALVPGSIIIDGGSGYCKFGWSKYAYPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYDDTESAKASRQQLKEAIYASLFDMNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLSFQSLYTVRTLKENLCYVALDYEAELLKDTKASFEAAGEGWFTLSKGRFQTAEILFQPHLAGVQAMGLHQAIALCVEHCHSADLACDSDWYKTIVLSGGTACLPGLAERIEKELHALLPPYVSNGIRVIPPPYGADTPWFGAKIVGNLSTFPGHWCVTKKQFRQKPRLNLIW*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain