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Report for Sequence Feature Glyma04g12440

Feature Type:gene_model
Chromosome:Gm04
Start:11522271
stop:11524395
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g12440
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G51750AT Annotation by Michelle Graham. TAIR10: subtilase 1.3 | chr5:21020266-21022608 FORWARD LENGTH=780 SoyBaseE_val: 0ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0008356GO-bp Annotation by Michelle Graham. GO Biological Process: asymmetric cell division SoyBaseN/AISS
GO:0043086GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0004252GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
PTHR10795Panther SUBTILISIN/KEXIN-RELATED SERINE PROTEASE JGI ISS
PTHR10795:SF17Panther gb def: possible protease [sinorhizobium meliloti] JGI ISS
PF00082PFAM Subtilase family JGI ISS
PF02225PFAM PA domain JGI ISS
UniRef100_G7ID47UniRef Annotation by Michelle Graham. Most informative UniRef hit: Subtilisin-like protease n=1 Tax=Medicago truncatula RepID=G7ID47_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MQ62UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MQ62_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g12440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g12440 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g112200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g12440
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g12440
>Glyma04g12440.2   sequence type=CDS   gene model=Glyma04g12440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTGGAAACTAACAGGCAAATATCTAGATGTTATAATATTTCAAGGTTTGCAGCTAGAAGGAGAAGCTACGAAGCTAAAGGTTGAAAAAGGTATTGTGGCCATATTCCTTGATACAAAGTATGAGCTACACACCACAAGAAGTCCAATATTCCTTGGTCTTGAACCAGCAAAAAGCACTAACATGTGGTCAGAGAAGCTAGCTAGCCATGATGTTATAGTAGGAGTGTTAGACACTGGGATTTGGCCAGAGAGTGAAAGCTTCAAAGATGTAGGCATGAGACCAGTACCTGCTTATTGGGAAGGTGCATGTGAGATTGGAACAAGCTTCACAAAAAGTCACTGCAATAAAAAGGTTGTGGGGGTAAGAGTGTTCTACCATGGATATGAAGCAGTAGTTGGTAGAATTAATGAGCAAAAAGAGTATAAGTCACCAAGAGATCAAGATAGGCATGGCACTCATGCAGTAGCTACGGTTGGAGGCTCTCCTATGCATGGGGCTAACCTTCTAGGTTATGCTAATGGCATAACCAGAGGAATGGCACCGGGTGAAAGGATTGCAGCCTACAAAGTGTGTTGGGTTGGTGGCTACTTCAACTCAGATATTGTGTCAGCTATTGATAAAGTTGTGGCTGATGGAGTGAATGTTCTTTACACCTCTTTGGGTGGTGGAGTCTCCTCTTATTACAGAGATAGTTTATCAATGATTGCATTTGAAGCAATGGAGAGGTGTGTTTTTGTTTCATGTTCTGCTGGAAATGCAGGACCTGACCCTGCCAGCCTCACCAATGTGTCACCATGGATCACCATAGTTGGAGGAAACACAATGGATAGGGATTTTCTAGTGGATGTTAGGCTTGGGAATGGCAAAAAAATGATTGGAGTTTCACTCTATAAATGGAAAAATGTGCTATCAATTGAGAAACAATACCCTTGGGTGTACATGGTGAGCAATTCTAGTAGGGTTGATCCAAGATCTATATGCTTGGAAGGGACCTTGGATCCTAAAGTGCTGTCAGGAAAGATAGTAATTTGTGATAGAAGCCTTAGTCCTAGAGTGCAAAAGGGTGATGTGGTGAGAAGTTTAGGAGGGGTGGGAATGATTCTCACAAACACGGAAGCCAATGGAGAAGAATTGGTTGCAGATTCTCACCTCCTTCTAGTAGTTGAAATAGGAGAGAAAGAAGGAAAAAAGCTCAAAAGTTATCTCCTATCAAGTAAAAGTTCTACTGCAACTCTAGCTTTTAAAGGCACAAGGTTGGGAATCAAACCATCTCCTGTAGTAGCAGCATTTTCATCAAGAAGGCCTAATTTTCTCACCCTTGAAATTCTAAAGCCTAACTTAGTGGCTCCTGCGGTGAACATTCTTGTTGCTTGGAGTGAGGCCATTCGTCCATCAAGCTTGAAAATAAACAACAGAAAAGTGAAGTTCAATATAGTCTCTGGCACCTCAATGTCATGCCCTCATGTGAGTGGCATAGCAACTTTGGTCAAGTCTAGGCACCCTGAGTGGAGTCCTACTACTGTAAAACCTGCTTTGATGACAACAACTTATGTTCTTGATAACACCAAGAAAACTCTCAGAGATGCCTCAATTGCTAAACCATTCAGTCCTTATGATCATGGTCTAAGACACATTGACCCTATTAGAGCTCTTGACCCTAGTTTGGTCTATGACATTATGCCACAGGACTACTTTGAATTTCTTCCTGTGATTGTTCACAAAACTATCACCAATGTTGGCCCTCCTGATTCCAAATACCATGTTATGGTCTCACCATTCAAAGGTGCTTCTATGAAAGTTGAGCCAAAAACCTTGAATTTTATCGAAAAACACCAGAAGTTGTCTTGTAAGATTACCTTCAAGCCAAAGATTCAACAAACCTCTCCTGAATTCGGTAGTATGGAATGGAAGGATGGCTTGCACACTATGAGAAGCCCTATTGTGATAACATGGATGCCACCACCAATGTGA
Predicted protein sequences of Glyma04g12440
>Glyma04g12440.2   sequence type=predicted peptide   gene model=Glyma04g12440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVWKLTGKYLDVIIFQGLQLEGEATKLKVEKGIVAIFLDTKYELHTTRSPIFLGLEPAKSTNMWSEKLASHDVIVGVLDTGIWPESESFKDVGMRPVPAYWEGACEIGTSFTKSHCNKKVVGVRVFYHGYEAVVGRINEQKEYKSPRDQDRHGTHAVATVGGSPMHGANLLGYANGITRGMAPGERIAAYKVCWVGGYFNSDIVSAIDKVVADGVNVLYTSLGGGVSSYYRDSLSMIAFEAMERCVFVSCSAGNAGPDPASLTNVSPWITIVGGNTMDRDFLVDVRLGNGKKMIGVSLYKWKNVLSIEKQYPWVYMVSNSSRVDPRSICLEGTLDPKVLSGKIVICDRSLSPRVQKGDVVRSLGGVGMILTNTEANGEELVADSHLLLVVEIGEKEGKKLKSYLLSSKSSTATLAFKGTRLGIKPSPVVAAFSSRRPNFLTLEILKPNLVAPAVNILVAWSEAIRPSSLKINNRKVKFNIVSGTSMSCPHVSGIATLVKSRHPEWSPTTVKPALMTTTYVLDNTKKTLRDASIAKPFSPYDHGLRHIDPIRALDPSLVYDIMPQDYFEFLPVIVHKTITNVGPPDSKYHVMVSPFKGASMKVEPKTLNFIEKHQKLSCKITFKPKIQQTSPEFGSMEWKDGLHTMRSPIVITWMPPPM*






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