Glyma04g12370 - SoyBase

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Report for Sequence Feature Glyma04g12370

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11450107
stop:	11457985
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56140	AT	Annotation by Michelle Graham. TAIR10: RNA-binding KH domain-containing protein \| chr5:22725462-22727932 FORWARD LENGTH=315	SoyBase	E_val: 2.00E-148	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1588	KOG	RNA-binding protein Sam68 and related KH domain proteins	JGI		ISS
PTHR11208	Panther	RNA-BINDING PROTEIN RELATED	JGI		ISS
PTHR11208:SF25	Panther		JGI		ISS
UniRef100_G7J0G1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: KH domain-containing protein n=2 Tax=Medicago truncatula RepID=G7J0G1_MEDTR	SoyBase	E_val: 3.00E-179	ISS
UniRef100_I1JVM0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVM0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12370

Paralog	Evidence	Comments
Glyma06g48070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g111900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g12370

Limit To All Plant Sequences

>Glyma04g12370.1   sequence type=CDS   gene model=Glyma04g12370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCAACTTCCGGCGCCGGCAGGTACATGGCTTTTCCGCCGTCTCCGTCCGCGCCTCCGTCGCCGCACCTCTCCGGTCTTCGCTCCACTCCCCTCTCCGACCCGGACAAATATCTAGCTGAGTTGTTGGGAGAACGTAACAAGCTTAGTCCCTTCATGGCTGTGCTTCCTCACTGCTTTCGATTGTTTAACCAAGAAATTTTGCGTGTAACCACGCTGATGGGGAATGCATCAGTTTTAGGTCAAAGTGGGCTTGAACACGCTAGCCCCCTGGCTACTGGAGGAATATTTTCAAATGGAGGTGCCGATGTGAACGGATGGGCATCACGATTTCAATCAGAAAGACCCAGCTTGTTACAGTCCTCATCAACACAAAACTGGCTGAGTCCACAAGGTAGCTCATCTGGTATTATTGTTAAAAAGACGGTCAGAGTAGATATTCCTGTGGACGCATATCCTAATTTTAACTTTGTTGGTCGCCTCCTAGGCCCTAGAGGAAACTCTCTAAAGCGTGTAGAAGCAAGTACTGAGTGTCGTGTCTTGATCAGGGGCCGAGGTAGCATTAAGGATCCAGCTAGGGAGGAAATGATGAGAGGAAAACCTGGGTATGAGCATCTGAATGAACCTCTCCACATTCTAGTTGAGGCAGAATTACCAGTTGAAATAGTAGATGCTCGCCTGATGCAGGCACGTGAAATACTTGAAGATTTGCTCAAACCGGTGGATGAATCTCAGGATTTCTACAAGAAGCAGCAACTTCGGGAGCTAGCAATGCTGAATGGCACTCTTCGTGAGGAGGGTTCTCCCATGTCTGGTTCTGTTTCACCCTTCCACAACAGCCTTGGTATGAAGAGGGCCAAGACCAGGGGGTAA

Predicted protein sequences of Glyma04g12370

Limit To All Plant Sequences

>Glyma04g12370.1   sequence type=predicted peptide   gene model=Glyma04g12370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSTSGAGRYMAFPPSPSAPPSPHLSGLRSTPLSDPDKYLAELLGERNKLSPFMAVLPHCFRLFNQEILRVTTLMGNASVLGQSGLEHASPLATGGIFSNGGADVNGWASRFQSERPSLLQSSSTQNWLSPQGSSSGIIVKKTVRVDIPVDAYPNFNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEPLHILVEAELPVEIVDARLMQAREILEDLLKPVDESQDFYKKQQLRELAMLNGTLREEGSPMSGSVSPFHNSLGMKRAKTRG*

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