Glyma04g12360 - SoyBase

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Report for Sequence Feature Glyma04g12360

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11395710
stop:	11400734
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36350	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr2:15238903-15241864 FORWARD LENGTH=949	SoyBase	E_val: 0	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0016246	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA interference	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0610	KOG	Putative serine/threonine protein kinase	JGI		ISS
PTHR24351	Panther	RIBOSOMAL PROTEIN S6 KINASE	JGI		ISS
PTHR24351:SF88	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7J0G5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Medicago truncatula RepID=G7J0G5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339AD1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339AD1 related cluster n=1 Tax=unknown RepID=UPI0002339AD1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12360

Paralog	Evidence	Comments
Glyma06g48090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g111700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g12360

Limit To All Plant Sequences

>Glyma04g12360.1   sequence type=CDS   gene model=Glyma04g12360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACCTCTGGTAATACATGTGAGATAGTGGAATCAAGGGAAGAGATAATTTCTGAATTCAAAATGGATGAAAAGCCTGAGAGTAGTTGTGCTCACAAATCAGGAAAGAAGTATTCGATTGAGGATGATATTAATCAGCTTTTTCAGGCTATTGAAATTAAAAGCTCATCTAGAAGTCGTAGTTCATCACGTTTACAAAAGAGTGCTCTTAAAAGGCCAATAAAAGTTACTTCATCTCAGGCATCAGGAATTGGCATCTCAGAGCCTGTAAGTTTAAAGCAGGCACTTAGAGGGTTGTGCATCTCTCAGGCCTCAGAAATGGCTGCTTTGAAGAGACTGACTAAGCCATGCAGTTCATCTAGAGTATCAGAGGCGGGCACCATCAAAAGGTTGTACACGGCAGTGGTAGATGAGGGGAAAGGGAACTTGGTTGAAATTTCTCTTGTGCCAGAGATATCTGCACCTTCTGATAAATTGTCCGGTGTAACTATATCAAGTTCAAGTGATAATCATGCTAGTCCTTTGGTTGATGCGACAAAACCAAAAGAAATGATAACTGGGTTTGCATCCCAATATCAGATTGTTCCTCTACCATTAGAGGTTGAGGGTGAGGAATTAATCACGGGAACTGGAAAACCAATACTTGCAAATTTGTCACCAGTTGCCTCTGCAAGTGAAGAAGTGCCAGAGGCCAGAATGCATCATGCTTCCTCAAGCAAAGCTTCTCTTGGTTCTTCATTGCCAGATAAGGGGCATGAAGCAAATTTACCTTCTGCATCTTGTCCTCCTAGCTCTAGCACTGGTAATGGAGCGGATAAATCCACAAGCAGTAATACATGTTTGTCAAAGCCAATATTCAATAACTTGAACTTCCTTAAGAAAAAAGTAAAGCAAGATTTAAGTTCTGCCTCTAGTTGCTCTACTCCTTGTACAAGTAATTTGGACAAGGAGGGTGGCAATTCTGATTTGAAGCATGATGTGAAACACAATGAGAAACAGTCGCCTAGCAGTTCAAATCATAGCATTGAAGTTAACTCAATTAATGGTGGTACAGATTCAAGCAAATCTGGTTTCAGCTTGAATTGCAATAAGAGAACTAAGTTTCTGGTGACAAAAGTTGATGAGAAATCAAGATCAAAGGAAAAGGGCGAGTACTCTCAAAGCTCAAAAAGTAGCATTGGTGAATATAGTAGTAGCACAAGCATCAGTGAGGAAAGCAGTCTAAGTGGTTCCAGTCGCAGTGGCCACAGGCCTCACATGTCAAAACACTTGAGATGGGAAGCTGTTCGTGCTGTTCAGCAGCAACATGGTAGTTTAAATTTGAAGCACTTTAAGCTGCTAAGGAGGCTTGGTAGTGGGGACATTGGAACTGTTTATCTTGCAGAACTAATTGGTACCAGCTGCCTTTTTGCACTCAAAGTGATGGACAGTGAATTTTTGGCAAGTCGGAAGAAAATGTTCAGGGCCCAAACTGAAAGAGAGATCCTTCAGATGCTGGACCATCCATTTCTTCCTACACTTTATTCCCATATTGCAACAGATAAGCTCTCTTGCTTGATTATGGAGTATTGTCCAGGCGGAGATCTGCATGTGCTGCGACAGAGGCAACCATACAAGAGTTTCTCGGAACAAGCAACTAGGTTTTATGTTGCTGAGGTTCTTCTTGCCCTGGAGTATTTGCACATGCTGGGAGTTGTATATCGAGACCTAAAGCCAGAAAATATCCTAGTACGAGAAGATGGACACATTATGCTGACAGATTTTGACTTGTCACTCAGGTGTTCTGTCAATCCAATGTTAGTCAAGTCATCTTCACCTGACACAGAGAAAACATCCAGTCCCTGTTCTGAGGCTAGTTGCATACACCCTTTCTGTCTCCAACCAGATTGGCAAGTTTCCTGCTTTACTCCCATTCTGTTATCTGCCGGAGTGAAATCTCGGAAGATGAAGGCTGACATAGCTTCTCATGTTGGTCCTCTGCCACAGCTTGTGGTGGAGCCTACCAGTGCACGGTCTAACTCCTTTGTTGGAACCTATGAATATCTTGCTCCGGAGATCATCAAAGGTGAGGGTCATGGGAGTGCTGTAGATTGGTGGACTTTTGGTATATTTTTGTTTGAGCTTTTATATGGTAAGACTCCCTTCAAGGGCCAATCAAATGAGGACACATTAGCCAATGTTGTTTCACAAAGCCTTAAGTTCCCGGGTACTCCAATAGTCAGTTTCCATGCAAGAGATTTGATCAGAGGATTGTTGATAAAGGATCCTGAAAATCGATTAGGTTCTGTAAAAGGTGCTGCTGAAATAAAGCAGCACCCTTTCTTTGAAGGCCTCAACTGGGCTCTAATACGGTGTGCAGCTCCACCAGAACTCCCCAAGTTCCGGGATTTTGGAAGTACAGCGCCATCTGTGGCTGCAAATAAGGAGAATGCAAATGATTTAGAGGATATAGAAGACTGTGAAGAGTTTGAGCTGTTTTAG

Predicted protein sequences of Glyma04g12360

Limit To All Plant Sequences

>Glyma04g12360.1   sequence type=predicted peptide   gene model=Glyma04g12360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTSGNTCEIVESREEIISEFKMDEKPESSCAHKSGKKYSIEDDINQLFQAIEIKSSSRSRSSSRLQKSALKRPIKVTSSQASGIGISEPVSLKQALRGLCISQASEMAALKRLTKPCSSSRVSEAGTIKRLYTAVVDEGKGNLVEISLVPEISAPSDKLSGVTISSSSDNHASPLVDATKPKEMITGFASQYQIVPLPLEVEGEELITGTGKPILANLSPVASASEEVPEARMHHASSSKASLGSSLPDKGHEANLPSASCPPSSSTGNGADKSTSSNTCLSKPIFNNLNFLKKKVKQDLSSASSCSTPCTSNLDKEGGNSDLKHDVKHNEKQSPSSSNHSIEVNSINGGTDSSKSGFSLNCNKRTKFLVTKVDEKSRSKEKGEYSQSSKSSIGEYSSSTSISEESSLSGSSRSGHRPHMSKHLRWEAVRAVQQQHGSLNLKHFKLLRRLGSGDIGTVYLAELIGTSCLFALKVMDSEFLASRKKMFRAQTEREILQMLDHPFLPTLYSHIATDKLSCLIMEYCPGGDLHVLRQRQPYKSFSEQATRFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPMLVKSSSPDTEKTSSPCSEASCIHPFCLQPDWQVSCFTPILLSAGVKSRKMKADIASHVGPLPQLVVEPTSARSNSFVGTYEYLAPEIIKGEGHGSAVDWWTFGIFLFELLYGKTPFKGQSNEDTLANVVSQSLKFPGTPIVSFHARDLIRGLLIKDPENRLGSVKGAAEIKQHPFFEGLNWALIRCAAPPELPKFRDFGSTAPSVAANKENANDLEDIEDCEEFELF*

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