Glyma04g12340 - SoyBase

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Report for Sequence Feature Glyma04g12340

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11357697
stop:	11359915
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10170	AT	Annotation by Michelle Graham. TAIR10: SNARE-like superfamily protein \| chr4:6344587-6345351 FORWARD LENGTH=254	SoyBase	E_val: 4.00E-91	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0859	KOG	Synaptobrevin/VAMP-like protein	JGI		ISS
PTHR21136	Panther	SNARE PROTEINS	JGI		ISS
PTHR21136:SF46	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_A9TZJ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: VAMP-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TZJ4_PHYPA	SoyBase	E_val: 2.00E-31	ISS
UniRef100_I1JVL8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVL8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12340

Paralog	Evidence	Comments
Glyma06g48100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g111600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g12340

Limit To All Plant Sequences

>Glyma04g12340.4   sequence type=transcript   gene model=Glyma04g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAGCACAAAACATTGCATGTTAAGATTCACACATTACACGATTTGGGTTGTGTTGTGTTGTGCCTGCCCTGTCCGTGGCATTTTCGTCTTTCTGTAATTTGTTCTTCCCTCTCACACTGTTATTCTTTCTTTCTCTTACTTTCTTATGAATCAGTCTCATCTCATCCCCAACAACCACACATGCAACACCATCAGGTTTTTGACTTCATAGCTGGCGAATTTCTTGCACTTTGCTTGGTTTTTGTCTCTTGACTGCTTGTGTTCTTCGGTTGGGATGAAAGATGATGAAGACTTCGGTTTGATTTTACAATAATAGGATATTGGTATTCAGTGAAGTTAACATTTGAGATACAGAACAAGAGAAAAGAAAATTTGGTGTAACTTTTCTGATTTGTTGGCCTGGGATTGTAGAGGAGTTTGGTTGAAATCTGATCAGGGTTATTGTTTACTGATTTTCGATGGATTCAATTCAAAATAAAGTTTATTACTGCTGTGTTTCTAAGGGTAACAATGTCCTGTATGTGTATGGTGGTGGAGACCAAGAAGTTGAGAAAGTTGCAGTCTTGTGCTTGGAGAGGGCTCCTCCTTTCCACAGGTGGTATTTTGAGACAATAGGTAAAAGAACTTTTGGGTTTTTTATGGAAGATGGGTATGTTTACTTCACAATTGTTGATAAAGGTCTTGGTAACCCGGTTGTTCTTTGGTTTCTGGAGCATGTTCGAGATGAATTTAAAAAGCTAGCTAGAAAAGGTTCAAGAGGAATTTTGCCAAACATGAATTCAATTTACATTCAGGAAAAACTGGTTCCTGTCATTCGTGGTCTGATCACTTCATTGGAGAGTGTTTCACATGGTGGTAGTAATTGGAGAGATGAAACTTCCTTGTCTTTTCAAGTGGATCTGTCTCCATCACCAAGTAATTTGAATGGACAAATTGAAGGTGCTAGTTCAACAAAAGCCCCATTATTGGGAAAATCTAACAAGCCAGATAAGAAGAAAGTAAAAGATCATGTCATTGCTATGAGAGATGTTGAGTTGGAGGAGCATCAGAAATCTACAGATAGAGGAGCAAGGGTTGATTCATGCAATCTGGATGGTGTAAGCCAAGGTGGTGCTGGTGCATCAGTCTCTTTGCAAAAGGATATGGGTTCAATGAGGATGAGATCAGCCCCTCAAAACATTCGTAAGAAATGGTGGCGCCAAGTACGCATTGTTCTAGCTATTGATGCAGCTGTGTGTATATTACTATTTATCATCTGGTTAGTAATATGTCATGGTATATCCTGCATTCGATAGAATTCAAACTTCTTGTGTGACTCTGAAATTGAATCACTATCATATTTGGAACTTGAGATTTTCCATGCATGATCTGATCAGCAACAGAAATTGGTTTCTTTGATGGGGCATGTAAATGGAAGTTACATACTGGTCATGTTGATTAGATCTTTAGTGCTATTTGCAGGCACGTGCTTCTTGTCACCCATATATAGGCATTTTACTTTATAAAGTCTACTGTACAGTTTCATTACTTTTAGACATCTGTACTTGTATATGAATTTTGGGAAGATTTTAAAGGTTCTTGATTGGCCTGTTTCTATAGATTTTTTTCTAAATAGATAATTATTTTCT

Coding sequences of Glyma04g12340

Limit To All Plant Sequences

>Glyma04g12340.3   sequence type=CDS   gene model=Glyma04g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAATTCAAAATAAAGTTTATTACTGCTGTGTTTCTAAGGGTAACAATGTCCTGTATGTGTATGGTGGTGGAGACCAAGAAGTTGAGAAAGTTGCAGTCTTGTGCTTGGAGAGGGCTCCTCCTTTCCACAGGTGGTATTTTGAGACAATAGGTAAAAGAACTTTTGGGTTTTTTATGGAAGATGGGTATGTTTACTTCACAATTGTTGATAAAGGTCTTGGTAACCCGGTTGTTCTTTGGTTTCTGGAGCATGTTCGAGATGAATTTAAAAAGCTAGCTAGAAAAGGTTCAAGAGGAATTTTGCCAAACATGAATTCAATTTACATTCAGGAAAAACTGGTTCCTGTCATTCGTGGTCTGATCACTTCATTGGAGAGTGTTTCACATGGTGGTAGTAATTGGAGAGATGAAACTTCCTTGTCTTTTCAAGTGGATCTGTCTCCATCACCAAGTAATTTGAATGGACAAATTGAAGGTGCTAGTTCAACAAAAGCCCCATTATTGGGAAAATCTAACAAGCCAGATAAGAAGAAAGTAAAAGATCATGTCATTGCTATGAGAGATGTTGAGTTGGAGGAGCATCAGAAATCTACAGATAGAGGAGCAAGGGTTGATTCATGCAATCTGGATGGTGTAAGCCAAGGTGGTGCTGGTGCATCAGTCTCTTTGCAAAAGGATATGGGTTCAATGAGGATGAGATCAGCCCCTCAAAACATTCGTAAGAAATGGTGGCGCCAAGTACGCATTGTTCTAGCTATTGATGCAGCTGTGTGTATATTACTATTTATCATCTGGTTAGTAATATGTCATGGTATATCCTGCATTCGATAG

>Glyma04g12340.4   sequence type=CDS   gene model=Glyma04g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAATTCAAAATAAAGTTTATTACTGCTGTGTTTCTAAGGGTAACAATGTCCTGTATGTGTATGGTGGTGGAGACCAAGAAGTTGAGAAAGTTGCAGTCTTGTGCTTGGAGAGGGCTCCTCCTTTCCACAGGTGGTATTTTGAGACAATAGGTAAAAGAACTTTTGGGTTTTTTATGGAAGATGGGTATGTTTACTTCACAATTGTTGATAAAGGTCTTGGTAACCCGGTTGTTCTTTGGTTTCTGGAGCATGTTCGAGATGAATTTAAAAAGCTAGCTAGAAAAGGTTCAAGAGGAATTTTGCCAAACATGAATTCAATTTACATTCAGGAAAAACTGGTTCCTGTCATTCGTGGTCTGATCACTTCATTGGAGAGTGTTTCACATGGTGGTAGTAATTGGAGAGATGAAACTTCCTTGTCTTTTCAAGTGGATCTGTCTCCATCACCAAGTAATTTGAATGGACAAATTGAAGGTGCTAGTTCAACAAAAGCCCCATTATTGGGAAAATCTAACAAGCCAGATAAGAAGAAAGTAAAAGATCATGTCATTGCTATGAGAGATGTTGAGTTGGAGGAGCATCAGAAATCTACAGATAGAGGAGCAAGGGTTGATTCATGCAATCTGGATGGTGTAAGCCAAGGTGGTGCTGGTGCATCAGTCTCTTTGCAAAAGGATATGGGTTCAATGAGGATGAGATCAGCCCCTCAAAACATTCGTAAGAAATGGTGGCGCCAAGTACGCATTGTTCTAGCTATTGATGCAGCTGTGTGTATATTACTATTTATCATCTGGTTAGTAATATGTCATGGTATATCCTGCATTCGATAG

Predicted protein sequences of Glyma04g12340

Limit To All Plant Sequences

>Glyma04g12340.3   sequence type=predicted peptide   gene model=Glyma04g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSIQNKVYYCCVSKGNNVLYVYGGGDQEVEKVAVLCLERAPPFHRWYFETIGKRTFGFFMEDGYVYFTIVDKGLGNPVVLWFLEHVRDEFKKLARKGSRGILPNMNSIYIQEKLVPVIRGLITSLESVSHGGSNWRDETSLSFQVDLSPSPSNLNGQIEGASSTKAPLLGKSNKPDKKKVKDHVIAMRDVELEEHQKSTDRGARVDSCNLDGVSQGGAGASVSLQKDMGSMRMRSAPQNIRKKWWRQVRIVLAIDAAVCILLFIIWLVICHGISCIR*

>Glyma04g12340.4   sequence type=predicted peptide   gene model=Glyma04g12340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSIQNKVYYCCVSKGNNVLYVYGGGDQEVEKVAVLCLERAPPFHRWYFETIGKRTFGFFMEDGYVYFTIVDKGLGNPVVLWFLEHVRDEFKKLARKGSRGILPNMNSIYIQEKLVPVIRGLITSLESVSHGGSNWRDETSLSFQVDLSPSPSNLNGQIEGASSTKAPLLGKSNKPDKKKVKDHVIAMRDVELEEHQKSTDRGARVDSCNLDGVSQGGAGASVSLQKDMGSMRMRSAPQNIRKKWWRQVRIVLAIDAAVCILLFIIWLVICHGISCIR*

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