Glyma04g12290 - SoyBase

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Report for Sequence Feature Glyma04g12290

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11266409
stop:	11270505
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71380	AT	Annotation by Michelle Graham. TAIR10: cellulase 3 \| chr1:26899989-26901749 REVERSE LENGTH=484	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
PTHR22298	Panther	ENDO-1,4-BETA-GLUCANASE	JGI		ISS
PF00759	PFAM	Glycosyl hydrolase family 9	JGI		ISS
UniRef100_G7IVD9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Endoglucanase n=1 Tax=Medicago truncatula RepID=G7IVD9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JVL2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVL2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12290

Paralog	Evidence	Comments
Glyma06g48140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g111300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g12290

Limit To All Plant Sequences

>Glyma04g12290.1   sequence type=CDS   gene model=Glyma04g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAATTCCTTGGTCACATTGTTCCTCCTCACATTGTTGTTGTTTGTGGGCAATGTTCAATGCAACCCAAACTACAGAGAAGCATTGGCTAAATCCTTGTTGTTTTTTCAAGGGCAGAGGTCAGGGAGGCTTTCTTCTGACCAACAAATCAAATGGAGATCAAATTCTGGCCTCTTTGATGGTCGCCTAGCCAATGTGGATTTAAGTGGAGGGTACTATGACGCAGGAGACAATGTGAAATTCAACTTTCCAATGGCCTACACCACTACCATGCTGTCATGGGCCACAATTGAATATGGGAAGAGAATGGGACCCCAAATCAAAGAGGCAAGAGCTGCAATTCGTTGGGCCACGGACTACCTCCTCAAGTGTGCCACATCCACACCTGGTAGGCTCTATGTTGGTGTTGGAGACCCAAATGTGGACCACAAATGCTGGGAGAGGCCAGAGGACATGGACACTGTCAGAACTGTCTATTGGGTCTCTCCCAGTAACCCTGGCTCTGATGTGGCTGCTGAAACCGCTGCTGCACTTGCTGCTGCATCTATTGTTTTCAGAAGGGTTGACCCAACATACTCTAACAAGTTGTTAAGAACTGCCCAACAGGTCTACCACTTTGCTTTGCAGTATCAAGGTTCTTATAGTGATTCACTTGGATCAGCTGTTTGCCCATTTTATTGCTCATATTCAGGTTTCAAGGATGAGCTATTGTGGGGAGCTGCATGGCTTTTCAGAGCAACAAATGCTGTTTTCTACTATAATTTGGTGAAGTCCTTGGGAGCTGATGATCAGCCAGATATCTTCAGCTGGGACAACAAATATGCTGGTGCACACGTCCTTCTCTCCAGGAGAGCATTGCTGAATGGTGATAAGAATTTTGATCAATACAAGCAAGAAGCTGAGAATTTTATGTGCAAGATTCTGCCCAACTCTCCCTCTTCAAGCACACAATATACACAAGGGGGACTCATGTACAAGCTTCCTGAAAGTAACCTCCAGTATGTGACATCTATAACATTCTTGCTTACAACCTATTCAAAGTATATGTCAGCTACAAAGCACACATTTAACTGCGGCAATGTCTTGGTAACTACAAACACCTTGAGGAGCATTGCTAAAAGACAGGTTGATTACATATTAGGTGCAAACCCATTAAGAATGTCTTACATGGTAGGCTATGGTCCATACTTTCCCAAGAGAGTTCACCACAGAGGATCTTCCTTGCCTTCAATAGAAGCTCATCCACAAACCATAGGCTGCGATGGAGGTTTCAACCCGTTTTTCCATTCAATGAATCCTAATCCTAACATATTGGTTGGAGCCATAGTCGGAGGTCCAAACCAAAATGACGGATTTCCAGATGACCGCAGTGATTACAGTCATTCTGAGCCTGCAACTTACATCAATGGTGCTTTTGTTGGACCTTTGGCATACTTTGCCGGTATCCACTAA

Predicted protein sequences of Glyma04g12290

Limit To All Plant Sequences

>Glyma04g12290.1   sequence type=predicted peptide   gene model=Glyma04g12290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNSLVTLFLLTLLLFVGNVQCNPNYREALAKSLLFFQGQRSGRLSSDQQIKWRSNSGLFDGRLANVDLSGGYYDAGDNVKFNFPMAYTTTMLSWATIEYGKRMGPQIKEARAAIRWATDYLLKCATSTPGRLYVGVGDPNVDHKCWERPEDMDTVRTVYWVSPSNPGSDVAAETAAALAAASIVFRRVDPTYSNKLLRTAQQVYHFALQYQGSYSDSLGSAVCPFYCSYSGFKDELLWGAAWLFRATNAVFYYNLVKSLGADDQPDIFSWDNKYAGAHVLLSRRALLNGDKNFDQYKQEAENFMCKILPNSPSSSTQYTQGGLMYKLPESNLQYVTSITFLLTTYSKYMSATKHTFNCGNVLVTTNTLRSIAKRQVDYILGANPLRMSYMVGYGPYFPKRVHHRGSSLPSIEAHPQTIGCDGGFNPFFHSMNPNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINGAFVGPLAYFAGIH*

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