Glyma04g12273 - SoyBase

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Report for Sequence Feature Glyma04g12273

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11244808
stop:	11251843
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12273

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43280	AT	Annotation by Michelle Graham. TAIR10: Far-red impaired responsive (FAR1) family protein \| chr2:17989739-17990861 FORWARD LENGTH=206	SoyBase	E_val: 2.00E-104	ISS
GO:0006301	GO-bp	Annotation by Michelle Graham. GO Biological Process: postreplication repair	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03101	PFAM	FAR1 DNA-binding domain	JGI		ISS
UniRef100_D7LJZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Far-red impaired responsive family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LJZ7_ARALL	SoyBase	E_val: 2.00E-103	ISS
UniRef100_I1KFX4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFX4_SOYBN	SoyBase	E_val: 9.00E-169	ISS

Expression Patterns of Glyma04g12273

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g12273 not represented in the dataset	Glyma04g12273 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12273

Paralog	Evidence	Comments
Glyma06g48170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12273 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g111200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12273

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g12273

Limit To All Plant Sequences

>Glyma04g12273.2   sequence type=transcript   gene model=Glyma04g12273   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGGTTATTCTGGAAAAAAATGCTTGGAAATTGGAATAACGTTTTGTGAAAATAAAAATCAGTAAACGCACAAAGCCACTAAGGTTTAGGGCACTCAACTCAAGTGGAGTGAAGTGGCGACAAACACCGCACTCCAACGGCACTGAGCCAGGACCACACCGGTGGTTTGTTACTTAACTGAAAATCACCATCATTTCACTCTTCTCCTTCTATAACCCTTTCATTCCAACGTCCTTAAAACTATGGTTAAATTGAGTTTGTTTTCTTCGATATTTCGATGGTTCTATAAGGCTACATCTATTTTTGTGGTTTGCTGATTCGTTGCGTTGTTATGCAATATGGAATCCCAATTAATTGATGGTAATGATGAGATGGAAGTTTCTGGGGATGTGGGTTTGAGTACGTGTGAAGTTCAGATGCATCAAGAAACATATGAAGTGGATCCAAATGAGGGGTGTAGAGTACTAGAGAGTTCTTCTTGGGGAGAGTTGGGTATCTGTGAAGATCATGCTATTCAGGAACCATATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGCTATTCTATGATGAATATGCCCGGCGATTAGGATTTGTCATGCGTGTGATGTCTTGTCGACGCTCAGAAAGGGATGGTAGGATTCTTGCCCGCAGACTTGGATGTAATAAAGAGGGTTATTGTGTCAGCATCCGAGGTAAATTTGCGTCAGTTCGTAAACCTAGGGCAAGCACAAGGGAAGGTTGTAAGGCAATGATTCATATCAAATATGATAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCATTAGTAGTCTCTCCACGTGAAGCACGCCAAACAATGGATGAGAAGGATAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCTTAAAAAACGGTTGTGTGCAACATATCAAGAACAGTTGACTTCTTTTATGAAAATTGTTGAAGAGCACAATGAGAAGCTATCTGCCAAAATTCATCATGTAGTTAATAATCTTAAAGAATTTGAATCCATAGAAGAGCTTTTGCACCAGACATAACCATGCATCATGTGAGTATTTAATCTCTTTATTTTTAGCATTTACATATTATTTTATAATATATCTATACTCTTGAATAAAATGATTTTCTCTCACCTAAAAATCTGATGAAGTTCTTAACAAGGTTTTTTTCTTCAATCTAAAACCGTATCCAACTGTACATGTATCCTAGCAACAGTTAATGATGTCTGTGGTTGGTCTTACATAATTTCAATGCTGTTTGGGTGGTGGATTTCCATTTCATAAAATACCGTATGATGTATTTATTTAATGTGTGTATTTAGTTGAATGTTGGGCGGTCAAGAGCCAACATGAGAATAAAGTAGGTGTAGCGGAGATGAGGATGTTGCGGTGGATGTGTGGTAAGACCCGACAGGATAAAATTAGAAACGAAGCTATTAGAGAGAGGGTTGGAGTAGCGCCTATTGTAAAGAAGATGGTGGAAAATAGACTTAGGTGGTTTGGGCATGTAGAGAGAAGACCGGTAGACTCTGTAGGGAGGAGAGTAGACCAGATGGAGAGAAGACAAACAATTCGAGGCAGAGGAAAACCCAAAAAGACTATAAGAGAGGTTATAAAAAAGGATCTCGAAATTAATGGTCTGGATAGAAGTATGGTACTTGATAGAACATTATGGCGAAAGTTGATCCATGTAGCCGACCCCACCTAGTGGGATAAGGCGTTGTTGTTGTTGTTGTTGTATTTAGTTGGGGTGCCAGCCTTATCCTTTCAGGCTTCTGGGTATATTCACATGTTGATTATCTAACTATTTATATTTGTATCTGTGCAAACTAGACTCATTTTCTTTTACATAAAAAAATAAAATCTTGGTTAT

>Glyma04g12273.3   sequence type=transcript   gene model=Glyma04g12273   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGGTTATTCTGGAAAAAAATGCTTGGAAATTGGAATAACGTTTTGTGAAAATAAAAATCAGTAAACGCACAAAGCCACTAAGGTTTAGGGCACTCAACTCAAGTGGAGTGAAGTGGCGACAAACACCGCACTCCAACGGCACTGAGCCAGGACCACACCGGTGGTTCTATAAGGCTACATCTATTTTTGTGGTTTGCTGATTCGTTGCGTTGTTATGCAATATGGAATCCCAATTAATTGATGGTAATGATGAGATGGAAGTTTCTGGGGATGTGGGTTTGAGTACGTGTGAAGTTCAGATGCATCAAGAAACATATGAAGTGGATCCAAATGAGGGGTGTAGAGTACTAGAGAGTTCTTCTTGGGGAGAGTTGGGTATCTGTGAAGATCATGCTATTCAGGAACCATATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGCTATTCTATGATGAATATGCCCGGCGATTAGGATTTGTCATGCGTGTGATGTCTTGTCGACGCTCAGAAAGGGATGGTAGGATTCTTGCCCGCAGACTTGGATGTAATAAAGAGGGTTATTGTGTCAGCATCCGAGGTAAATTTGCGTCAGTTCGTAAACCTAGGGCAAGCACAAGGGAAGGTTGTAAGGCAATGATTCATATCAAATATGATAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCATTAGTAGTCTCTCCACGTGAAGCACGCCAAACAATGGATGAGAAGGATAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCTTAAAAAACGGTTGTGTGCAACATATCAAGAACAGTTGACTTCTTTTATGAAAATTGTTGAAGAGCACAATGAGAAGCTATCTGCCAAAATTCATCATGTAGTTAATAATCTTAAAGAATTTGAATCCATAGAAGAGCTTTTGCACCAGACATAACCATGCATCATGTCACGGTGTGACCACTAAAATGTGTCGTGTTCAAAGAATGATCCTTTAATCCTTCATGAATTGCATTCCCTGATTCAGTGAATACTTTGGTAAGGCTAACCTATTTTTTTGGTGAACCGATAATGCTAGCTTTGCAACCAAGAGAAGGCCACCATATATATATATATATATATATATATATATATATATATATAAACTGTGAAGTTATATTGCTTGTCATAGTACTTAAAAGCTAAAAGAGGTTTTGTGACATTTTGGCCACTGACAAACTAGTTACGTCCCTTTAAGCCTCAGGGTACAATGTAATCTTGTATCATTTTTGTACTCCCCTAATTTTACAGAAGAAAATGTAAACAACAATGATATTGTGACTTGCTTAGTTTGAAACTACTGTCAGCTAAATATTACTATTTGTTATTACCAGATTCAGAAGTGTTCTCCTGACCAATCTTCACTAACAATTTGATCTCCTACTTGGTATGCTGAACTCCTCTAGGCGGTGGGGTGGTACCGAGAGCTTCTTCCGCACTCATTCTGTTTACAGGATTTTGTTGAAGTACACCATGCAAAAAATATTTTGCCTCATCGCTTAGCCGTGGCATCCCAGTAAAGTCCAGTGAGCCATATGTGATCACATCAAAGATGTTACTTCCAAAATATTTCAAGAAGGGATGTTGTCCACTAAATAGGAGATAAATAATAATGCTTATGCTCCAAAAGTCTGAAGCATAGCTCGACTTCCCACTCAAAACCTTATTTAGTAAAGTGTACCAACATACAATGAAGATCCTCTCCCGTTTCTAAGAACTGGGATAATCCAAAATCAGAAGCTTTTAATGTTGAATTTTTGCTAGATGATCGAAACAAAAAATTCTTAGGTTTAAAATCTCTATGAACCGCATGGTGTGAATGACACTGAAGTGATGTTTAGCATTTGTCTCACAATTGGAATTACTTCCCCCTTCAGCATACCGCTGATGCTTCTTGGTGAGTGTGCGCTCCAAAAGGTTGTCTCCCCTACATAGTTCCATAACAATGTAGACATTGTAATTATCTCCATAAGCACTTTGAAATTGGACCACATTTTAGAGGCCCTGGCCAATCAACGACTTCATAATTCAAAGTTGCTGATTTTGGATTATCCCTCTTAAAAATGGAAGAGGATCTTCATGATAGTGTTGATACACTTTACTACATTGCGCCTGGGGTTGAGTGGGAACTCAATTTATGAAGTGGACAACACCCCTTCTTGAAATATTATGGCAGTAGACCACATATGGCTAAACTATGAGGCAAAAAAGATTTTTTTGCAAGGTGTACTTCAACAAAATCCTGCGAACAAAATGAGTGCAGATTAACTCTCGGTACTGCCCGGAGGATGAGATCAGATTGCTGGTGGAGTGGTCTAGAGAACACTTCAGAATCCGGTGAAAACACTATTGTTTATAGGACAAATGTGTTGGAATGTTTTATCAAGCGAGAAACTACTCTATAATGTAATCCATCCTAACTTTTTCTTTGTATATATTTGTCAATACTTTAGTAAAAATTTAAAACGTCATAAATCT

Coding sequences of Glyma04g12273

Limit To All Plant Sequences

>Glyma04g12273.1   sequence type=CDS   gene model=Glyma04g12273   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCCAATTAATTGATGGTAATGATGAGATGGAAGTTTCTGGGGATGTGGGTTTGAGTACGTGTGAAGTTCAGATGCATCAAGAAACATATGAAGTGGATCCAAATGAGGGGTGTAGAGTACTAGAGAGTTCTTCTTGGGGAGAGTTGGGTATCTGTGAAGATCATGCTATTCAGGAACCATATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGCTATTCTATGATGAATATGCCCGGCGATTAGGATTTGTCATGCGTGTGATGTCTTGTCGACGCTCAGAAAGGGATGGTAGGATTCTTGCCCGCAGACTTGGATGTAATAAAGAGGGTTATTGTGTCAGCATCCGAGGTAAATTTGCGTCAGTTCGTAAACCTAGGGCAAGCACAAGGGAAGGTTGTAAGGCAATGATTCATATCAAATATGATAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCATTAGTAGTCTCTCCACGTGAAGCACGCCAAACAATGGATGAGAAGGATAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCTTAAAAAACGGTTGTGTGCAACATATCAAGAACAGTTGACTTCTTTTATGAAAATTGTTGAAGAGCACAATGAGAAGCTATCTGCCAAAATTCATCATGTAGTTAATAATCTTAAAGAATTTGAATCCATAGAAGAGCTTTTGCACCAGACATAA

>Glyma04g12273.2   sequence type=CDS   gene model=Glyma04g12273   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCCAATTAATTGATGGTAATGATGAGATGGAAGTTTCTGGGGATGTGGGTTTGAGTACGTGTGAAGTTCAGATGCATCAAGAAACATATGAAGTGGATCCAAATGAGGGGTGTAGAGTACTAGAGAGTTCTTCTTGGGGAGAGTTGGGTATCTGTGAAGATCATGCTATTCAGGAACCATATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGCTATTCTATGATGAATATGCCCGGCGATTAGGATTTGTCATGCGTGTGATGTCTTGTCGACGCTCAGAAAGGGATGGTAGGATTCTTGCCCGCAGACTTGGATGTAATAAAGAGGGTTATTGTGTCAGCATCCGAGGTAAATTTGCGTCAGTTCGTAAACCTAGGGCAAGCACAAGGGAAGGTTGTAAGGCAATGATTCATATCAAATATGATAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCATTAGTAGTCTCTCCACGTGAAGCACGCCAAACAATGGATGAGAAGGATAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCTTAAAAAACGGTTGTGTGCAACATATCAAGAACAGTTGACTTCTTTTATGAAAATTGTTGAAGAGCACAATGAGAAGCTATCTGCCAAAATTCATCATGTAGTTAATAATCTTAAAGAATTTGAATCCATAGAAGAGCTTTTGCACCAGACATAA

>Glyma04g12273.3   sequence type=CDS   gene model=Glyma04g12273   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCCAATTAATTGATGGTAATGATGAGATGGAAGTTTCTGGGGATGTGGGTTTGAGTACGTGTGAAGTTCAGATGCATCAAGAAACATATGAAGTGGATCCAAATGAGGGGTGTAGAGTACTAGAGAGTTCTTCTTGGGGAGAGTTGGGTATCTGTGAAGATCATGCTATTCAGGAACCATATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGCTATTCTATGATGAATATGCCCGGCGATTAGGATTTGTCATGCGTGTGATGTCTTGTCGACGCTCAGAAAGGGATGGTAGGATTCTTGCCCGCAGACTTGGATGTAATAAAGAGGGTTATTGTGTCAGCATCCGAGGTAAATTTGCGTCAGTTCGTAAACCTAGGGCAAGCACAAGGGAAGGTTGTAAGGCAATGATTCATATCAAATATGATAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGATCATAATCATCCATTAGTAGTCTCTCCACGTGAAGCACGCCAAACAATGGATGAGAAGGATAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCTTAAAAAACGGTTGTGTGCAACATATCAAGAACAGTTGACTTCTTTTATGAAAATTGTTGAAGAGCACAATGAGAAGCTATCTGCCAAAATTCATCATGTAGTTAATAATCTTAAAGAATTTGAATCCATAGAAGAGCTTTTGCACCAGACATAA

Predicted protein sequences of Glyma04g12273

Limit To All Plant Sequences

>Glyma04g12273.1   sequence type=predicted peptide   gene model=Glyma04g12273   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESQLIDGNDEMEVSGDVGLSTCEVQMHQETYEVDPNEGCRVLESSSWGELGICEDHAIQEPYEGMEFESEDAAKLFYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFASVRKPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAELRLKKRLCATYQEQLTSFMKIVEEHNEKLSAKIHHVVNNLKEFESIEELLHQT*

>Glyma04g12273.2   sequence type=predicted peptide   gene model=Glyma04g12273   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESQLIDGNDEMEVSGDVGLSTCEVQMHQETYEVDPNEGCRVLESSSWGELGICEDHAIQEPYEGMEFESEDAAKLFYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFASVRKPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAELRLKKRLCATYQEQLTSFMKIVEEHNEKLSAKIHHVVNNLKEFESIEELLHQT*

>Glyma04g12273.3   sequence type=predicted peptide   gene model=Glyma04g12273   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESQLIDGNDEMEVSGDVGLSTCEVQMHQETYEVDPNEGCRVLESSSWGELGICEDHAIQEPYEGMEFESEDAAKLFYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFASVRKPRASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLVVSPREARQTMDEKDKKIQELTAELRLKKRLCATYQEQLTSFMKIVEEHNEKLSAKIHHVVNNLKEFESIEELLHQT*

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