Glyma04g12240 - SoyBase

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Report for Sequence Feature Glyma04g12240

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11218061
stop:	11222578
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10080	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13530.1); Has 120 Blast hits to 114 proteins in 21 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 12; Plants - 100; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr4:6300454-6302560 REVERSE LENGTH=325	SoyBase	E_val: 2.00E-28	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_I1JVK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVK9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12240

Paralog	Evidence	Comments
Glyma06g48180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g111000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g12240

Limit To All Plant Sequences

>Glyma04g12240.1   sequence type=CDS   gene model=Glyma04g12240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCTAATCCAACAACCATGGACGCAAAACGCGAACTCGAAGTGGAAGACTGGGAACTGCTCCACCCAAACGACGACGATTCAATCGTGTTCGGTGGGCCCCCACTCGACTCTATCCTCCCCGATCACTTCTCCCTTAATCCCAATTCCAGTTGCAGTTCCAATTCCAATTCCAATTCCTCCTCCGAGGTCGATCGCAACTTCGACGATTCCTATGTTGCCAATCAGATATTCCCAAATTCCACCCTCGCACCCTGGAACGGGGATTCCGATTCCGACACCACCGCCACCAACGCCCCCGTGGTGGCGATGGCCGAGGCCGAGGCCGAGGTTGTGGTGGAACAAGAAGAGGAACAGAAAAAAATGGAAGAAGTGGAAGAGAAAGATGATGATGAGGAGGATGAGGGGGAGGAGGAGGAGGAAGAAGAAGAGGAGAAGGAGAAGAGATTGGTGTGGTGGAAGGTTCCTTTTGAGGTGTTGAGGTATTGGGTGAACCCTCTGCCTCTGCCTCTCCCTGTTTGGTCTCTCTCTGTCGCTGCCGCCGCTGCTTTTCTGGGACTCTTCTTCCTGGGACGGAGGTTGTACAGAATGAAGCGCAAGACTCAAACTTTGAAGCTCAACCTCGCTCTCGATGATAAGAAGGTGTCTCAGCTCATGGGTCGTGTTGCTCGTCTTAATGAAGCATTTTCAGTAGTGAGGCGTGTTCCCATAGTGCGACCACCATCTCTGCCATCTTCAAGTGTGACTCTGAGGCCTGTGATGAGTATGAGATGA

Predicted protein sequences of Glyma04g12240

Limit To All Plant Sequences

>Glyma04g12240.1   sequence type=predicted peptide   gene model=Glyma04g12240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESNPTTMDAKRELEVEDWELLHPNDDDSIVFGGPPLDSILPDHFSLNPNSSCSSNSNSNSSSEVDRNFDDSYVANQIFPNSTLAPWNGDSDSDTTATNAPVVAMAEAEAEVVVEQEEEQKKMEEVEEKDDDEEDEGEEEEEEEEEKEKRLVWWKVPFEVLRYWVNPLPLPLPVWSLSVAAAAAFLGLFFLGRRLYRMKRKTQTLKLNLALDDKKVSQLMGRVARLNEAFSVVRRVPIVRPPSLPSSSVTLRPVMSMR*

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