Glyma04g12230 - SoyBase

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Report for Sequence Feature Glyma04g12230

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11209384
stop:	11214780
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71360	AT	Annotation by Michelle Graham. TAIR10: Galactose-binding protein \| chr1:26892214-26894166 REVERSE LENGTH=596	SoyBase	E_val: 4.00E-153	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1396	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12953	Panther	MEMBRANE PROTEIN CH1 RELATED	JGI		ISS
PF07738	PFAM	Sad1 / UNC-like C-terminal	JGI		ISS
UniRef100_G7JKT4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein-like protein n=1 Tax=Medicago truncatula RepID=G7JKT4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KFX6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KFX6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12230

Paralog	Evidence	Comments
Glyma06g48190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g110900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g12230

Limit To All Plant Sequences

>Glyma04g12230.2   sequence type=CDS   gene model=Glyma04g12230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAGATCACGGAAAGCTCTTCTGGAAAGAAGGGCTATACAGGAGGCTACAAGTGGGAGGAACTATCTGTATAAAGTTTCTCTGTCGTTGGTTTTTGTTTTGTGGGGTCTGGTCTTCCTCTTCAGCTTATGTATAAGCCATGGCCATGGTTATGGAGATCATGAATCTAGAGAAGTTCCAGTTGGTGTATCAAATTGGAATGAAGATGAACACAGACAATGTAAAAACTCTAATTCTGCTGATGAATATTTAACTAAAGAGACTGATGATGTCTACATTCCTTCTGAGACTTTCTCCTCTGATGGTGCTAAAACTGATGGTTTAATCAGTGAGTCACTTTCCAGTGGAGAAAGCATAAATCGTGTAGAACCGGGCGATAAAGAAAGTTCCATTTCTCCTGATACAGAGGAGCATGAAGTTGAGAGATCTGAATCTGCTGTGAAGCATCAAAATGATGTGCAGAAGTATAATCACTTGTCTCAAGCAATGCCTCTTGGTCTTGATGAATTCAAGAGCAGGGCAATTGGTTCTAAAATTAAGTCAGGTACTAATCCTTCTGGAAGTGTGATACATAGATTAGAGCCTGGTGGTGCTGAATACAATTATGCTTCAGCATCAAAGGGAGCCAAAGTTTTAGCTTCTAACAAAGAAGCCAGAGGTGCCTCTGACATTCTAAGCAGAAACAAAGACAAATATCTTCGAAATCCGTGTTCTTCAGAAGAGAAATTTGTTGTCATAGAACTTTCAGAAGAAACCTTGGTAAAAACAATAGAGATAGCTAATTTTGAGCACCACTCTTCCAATTTCAAAGAGTTTGAATTATATGGCAGTTTGGTATATCCGACAGAGGCTTGGATTTTCCTTGGGAATTTCACGGCCTCAAATGTGAAGCAGGCTCAAAGGTTTGTTCTTGAGGAGCAAAAATGGATGCGATATATAAAATTGAATCTTCAAAGCCACTATGGTTCAGAATTTTATTGCACACTGAGCATAGTTGAAGTTTATGGGGTGGATGCCATTGAGAGAATGCTAGAGGATTTGATATATGCTCAAGATAAGCCATTTGCGTCTGGGGAAGGTAATGGTGAGAAGAGGGTAGCATCTCCCCTTGTTAACGCTGCCGAGGCTGACAATGTTAGGCAAAATACTATCACAGGGATCAATTCTGATCCTGCTTCAGAAATCTCTTCTGAAAACCCAGAAGCTATAAATGTGAAAAGAAATGTTCCTGATCCAGTTGAAGAAATCCGTCAACAAGTTGGTCGGATGCCGGGGGATACCGTTCTCAAGATTCTGATGCAGAAAGTTCGTTATCTGGACTTAAATTTGTCTGTTTTGGAGCAGTATATGGAGGACTTAAATTCTAGATATATCAATATTTTCAAAGAGTACAACAAAGACATGGGAGAAAAAGATCTACTTCTAGAGAAGATCAAAGAAGAAATTAGAAGATTCCTTGAACGACAAGATGTTATGATGAAAGAATTTAGAGATCTTGACTCTTGGAAGTCCCATTTTTCTGTGCAACTGGATCAGGTACTAAGGGATAATGCTGTTTTAAGGTCTGAGGTTGAAAAAGTCCGGGAAAATCAAGTGTCTTTGGAAAACAAGGGTGCAGTTGTGTTTTCTGTGTGTGTTATTTTTTCATTGCTTGCTATATTTCGGCTATCTTTGGATATGATTATGAGCCTCTATAGAGTCCTAAGTTTTGAAAGAACAATAACCTCCAGGAGATTTTGGCAAGGGAGCTCTTCCTGGCTTTTCCTATTATTGAGTTGTAGCATTATTATTTTCATATTAACTTTATGA

Predicted protein sequences of Glyma04g12230

Limit To All Plant Sequences

>Glyma04g12230.2   sequence type=predicted peptide   gene model=Glyma04g12230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRSRKALLERRAIQEATSGRNYLYKVSLSLVFVLWGLVFLFSLCISHGHGYGDHESREVPVGVSNWNEDEHRQCKNSNSADEYLTKETDDVYIPSETFSSDGAKTDGLISESLSSGESINRVEPGDKESSISPDTEEHEVERSESAVKHQNDVQKYNHLSQAMPLGLDEFKSRAIGSKIKSGTNPSGSVIHRLEPGGAEYNYASASKGAKVLASNKEARGASDILSRNKDKYLRNPCSSEEKFVVIELSEETLVKTIEIANFEHHSSNFKEFELYGSLVYPTEAWIFLGNFTASNVKQAQRFVLEEQKWMRYIKLNLQSHYGSEFYCTLSIVEVYGVDAIERMLEDLIYAQDKPFASGEGNGEKRVASPLVNAAEADNVRQNTITGINSDPASEISSENPEAINVKRNVPDPVEEIRQQVGRMPGDTVLKILMQKVRYLDLNLSVLEQYMEDLNSRYINIFKEYNKDMGEKDLLLEKIKEEIRRFLERQDVMMKEFRDLDSWKSHFSVQLDQVLRDNAVLRSEVEKVRENQVSLENKGAVVFSVCVIFSLLAIFRLSLDMIMSLYRVLSFERTITSRRFWQGSSSWLFLLLSCSIIIFILTL*

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