Glyma04g12220 - SoyBase

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Report for Sequence Feature Glyma04g12220

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11196686
stop:	11201476
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10120	AT	Annotation by Michelle Graham. TAIR10: Sucrose-phosphate synthase family protein \| chr4:6315033-6319785 FORWARD LENGTH=1050	SoyBase	E_val: 0	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0005985	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0046524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose-phosphate synthase activity	SoyBase	N/A	ISS
PTHR12526	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PTHR12526:SF169	Panther		JGI		ISS
PF00534	PFAM	Glycosyl transferases group 1	JGI		ISS
PF05116	PFAM	Sucrose-6F-phosphate phosphohydrolase	JGI		ISS
UniRef100_I1JVK7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JVK7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5EEP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sucrose-phosphate synthase 1 n=1 Tax=Vitis vinifera RepID=Q5EEP9_VITVI	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12220

Paralog	Evidence	Comments
Glyma06g48200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g110200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g12220

Limit To All Plant Sequences

>Glyma04g12220.2   sequence type=CDS   gene model=Glyma04g12220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGCCTATTGAGATGTTGTCATGCCCCTCTGATGGCAGTGACTGTGGGGAAGCATACATCATTCGTCTTCCATGTGGACATCGTGATAAGTACATACCAAAAGAATCACTTTGGCCTCACTTGCCTGAATTTGTGGATGGCTCTAAGTCACATTGTTAACATGGCAAGAGTTTTAGGGGAGCAAGTGAATGGTGGGAAGCCAACATGGCCTTATGTTATCCCTGGTCACTATGCTGATGCTGGGGAGGTAGCAGCACACTTATCAGGTGCATTAAATGTGCCTATGGTGCTCTCAGGCCACTCGTTAGGCCGGAACAAGTTTGAGCAATTGTTGATGCAAGGGAGGCTCTCTAGGGAGGCCATAAATGCAACCTACAAGATCATGAGGAGGATTGAGGCTGAGGAGTTAGGTGTGGATGCTACTGAAATGGTTGTCACTAGCACAAGGCAAGAGATTGAAGAGCAATGGGGACTGTATGATGGGTTTGATCTCAAGTTGGAGAGGAAGCTTAGGGTCAGGAGAAGACGCAGAGTGAGTTGCCTTGGAAGACACATGTCAAGGATGGTGGTAATTCCTCCAGGCATGGACTTCAGCTATGCCACAACACAAGACTCGATAATGAGATTTTTCACAAATCCTCACAAACCAACAATACTAGCCCTGTCCTATCCTGACCCGAAGAAAAATGTCATGAATTTGCTCAAGGCTTTTGGGGAATGCCAGACCCTAAGAAAACTAGCTAACTCGACCCTCATACTTGGCAACAGAGATGACATTGAAGAAATGTCTAACAACAGCTCTGTTGTTCTTACCATGGTGCTCAAACTCATTGACAAGTATGATTTGTATGGGAGTTTTATCAACCCAACCCTGATGGAACCATTTGGTCTCACACTGATCGAGGCTGTAGCTTATGGTTTACCTGTTGTTGCAACAAAAAATGGAGGGCCAGTGGATATTCTGAAGTCAATTCATAGTCAAGCACTCAACAATGGACTCTTGATTGATCCACACGACCACAAATCGATAGAAGAAGCACTGTTAAAGCTTGTTGCAGACAAAAATCTTTGGCTAGAATGCCGCAAAAATGGCCTAAAAAGCATCCATCGGTTTTCTTGGCCTGAACATTGCCGCAACTACCTCTCCCATGTTGAATTCTCCACTGAAGGAGACTCCAAGCTGAATGGAGAGATGGACCCTGTAGCAAGGCAGAAGCAAATTATTGAAGCAATCATGTGCAGGGTCTCTTCCACTGGCAATTCTAATGCCAATTGTTACTTTCCTGGTAGGAGGCAAAGGCTAGTTATGGTAGCTGCTGATTGTTATGATAGTGATGGAAATATAGCCGAGGAGGCTTTTCAGGCAGTTGTCATAAATGTGATGAAAGTCGTACGACCGGGCATCAGATCAGGCAGGGTTGGTGTGATGTTGCAAACTGGTTTAAGTTTTCAAGAGACAATTGAAGCATTGAACAACTTCCAAGTGAACATGGAAGAATTTGATGTTGTGGTTTGCAACGGTGGAAGTGAAATGTATTATCCATGGAAAGATTTAATGGCTTATACTGATTATGAGGCCTATGCTGAGTATGCATGGCCAGGTGAGAATATTAGATCAACAATACCGAGGTTTGCTAAAGTTGATGATGGAGAGGAGAATGACATCGTAGAGTATGCTAGTGCTTGCAGTTCAAGGTGCTACTCCTATAGTGTGAAACCAGGAGCCATGATCCAGAAGATAGATGAGCTTCGCCAAAGGTTGCGAATGAGAGGCTTACGCTGTAACCTGGTCTATACACATGCAGGATTGAGATTAAATGTGATACCATTGTTTGCTTCAAGAAAACAAGCACTAAGGTATCTGTCAGTTAAGTGGGGAATTGATCTATCCAAAGTGGTTGTATTTGTGGGAGAAAAAGGTGACACGGATTATGAAGAACTAGTGTCTGACATACAGAAGACACTTGTTTTAAAGGGGGCTGTTGAATATGGCAGTGAAAGGCTTCTTCGCAGTGAAGAGAGTTACAAAAGAGAAGATGTGTTATCCCAAGATAGCCCCAACATTATCTATGCAGAGAAGAGCTATGAGGATTGTGTGATATTTCAGCAATTCTGGAGCATCTCAAAGTATCATGATTTCTGTTTTGGTAACTATTTCTAA

Predicted protein sequences of Glyma04g12220

Limit To All Plant Sequences

>Glyma04g12220.2   sequence type=predicted peptide   gene model=Glyma04g12220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESLLRCCHAPLMAVTVGKHTSFVFHVDIVISTYQKNHFGLTCLNLWMALSHIVNMARVLGEQVNGGKPTWPYVIPGHYADAGEVAAHLSGALNVPMVLSGHSLGRNKFEQLLMQGRLSREAINATYKIMRRIEAEELGVDATEMVVTSTRQEIEEQWGLYDGFDLKLERKLRVRRRRRVSCLGRHMSRMVVIPPGMDFSYATTQDSIMRFFTNPHKPTILALSYPDPKKNVMNLLKAFGECQTLRKLANSTLILGNRDDIEEMSNNSSVVLTMVLKLIDKYDLYGSFINPTLMEPFGLTLIEAVAYGLPVVATKNGGPVDILKSIHSQALNNGLLIDPHDHKSIEEALLKLVADKNLWLECRKNGLKSIHRFSWPEHCRNYLSHVEFSTEGDSKLNGEMDPVARQKQIIEAIMCRVSSTGNSNANCYFPGRRQRLVMVAADCYDSDGNIAEEAFQAVVINVMKVVRPGIRSGRVGVMLQTGLSFQETIEALNNFQVNMEEFDVVVCNGGSEMYYPWKDLMAYTDYEAYAEYAWPGENIRSTIPRFAKVDDGEENDIVEYASACSSRCYSYSVKPGAMIQKIDELRQRLRMRGLRCNLVYTHAGLRLNVIPLFASRKQALRYLSVKWGIDLSKVVVFVGEKGDTDYEELVSDIQKTLVLKGAVEYGSERLLRSEESYKREDVLSQDSPNIIYAEKSYEDCVIFQQFWSISKYHDFCFGNYF*

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