Glyma04g12200 - SoyBase

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Report for Sequence Feature Glyma04g12200

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11172611
stop:	11185491
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71340	AT	Annotation by Michelle Graham. TAIR10: PLC-like phosphodiesterases superfamily protein \| chr1:26885556-26887321 REVERSE LENGTH=328	SoyBase	E_val: 1.00E-131	ISS
GO:0006071	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerol metabolic process	SoyBase	N/A	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008081	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity	SoyBase	N/A	ISS
GO:0008889	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycerophosphodiester phosphodiesterase activity	SoyBase	N/A	ISS
KOG2258	KOG	Glycerophosphoryl diester phosphodiesterase	JGI		ISS
PTHR23344	Panther	GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE	JGI		ISS
PF03009	PFAM	Glycerophosphoryl diester phosphodiesterase family	JGI		ISS
UniRef100_B9S6X7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycerophosphoryl diester phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9S6X7_RICCO	SoyBase	E_val: 1.00E-149	ISS
UniRef100_I1JVK6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVK6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12200

Paralog	Evidence	Comments
Glyma06g48210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g110300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g12200

Limit To All Plant Sequences

>Glyma04g12200.2   sequence type=transcript   gene model=Glyma04g12200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAATATTATGGGTCCTTATTATAACCTTAATTAATGAAGTAGTTTTGGTGGTGGTTTGCAAGTAATAAATAAATTGATACATCGACAAGACTGTGTGTTGCCACTGCTCTAAGTTGCGTGGATCGAAACAAAAGACATAGCAATAGAATTAAGATGCAGCAGAGTTCAAGATCACGAAAAGCGGCATTGAGAGTCAGAGTTCCTTCGCGGAAGCTCATGATTCTCTCTCTCGCCATTTTCGCCATTCTCCCTCCCATTTTCTTCCACTTCCGCCTCCGACGCCTCCAACAGCTGCAACTCACAAAGTGCCGTTGGCTCAACGATCCTCCTCTAGTCTGCGCCCACGGTGGCGATTCCTCCAAGGCTTCTCCAAACACTATGGCGTCGTATTTCCACGCTCTTCAGTCTCGCGTCGACTGCATTGAGATCGACGTTTCTCGTTCTTCTGACGGAGTTCTCTTTGCTCTCCATGACAGGGATTTGCAGCGCTTAAATGGAAACACTAGTTCTAAAGTTGGTTACATGAACTCAGAAGAGATAAGAAAGCTCAGTGCTTCACATCAGTCTACCTCAAAGTTTACTGATGAAAGTATACTTACAATCCAAGATGCTCTGATGTTGACTGCAAATTCAGTACGACAGATAGTTCTAGATGTTAAGGTTGGACCCCCGTTTTATGAGAAAAAGCTTGCCAAAGATGTTCTCTCTATTGTGGAGAAGACGGAGTGCAGCAACTGCCTCATATGGGCTAAAAGTGACATTTTAGCAAGGGATGTAATTAAACTCTCATCAGAAATTACAGTTGGCTACATTGTTATGAGGGATCCTTCTACTGGAGCTAGGACAAATTTGTTGAGAATGAAAGGTGCTGAGGTTGTTGGTGTCTATCATCCACTGATTGATGAAAAGCTTATGAAAGTTTTGCACTGGAGGAACAAAAAGGTGTATGCCTGGACAGTTGATGATGCAGAATCCATGCAAAAGATGTTGTTTGAACATGTTGATGCTATTGTTACGAGCAACCCAACTGTTCTTCAACGCCTAATGCAAGATATCAAAACACAATGTCTTGAAGAAGGTGATTAAGCAACAAGTATCTATTGCAG

>Glyma04g12200.3   sequence type=transcript   gene model=Glyma04g12200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAATATTATGGGTCCTTATTATAACCTTAATTAATGAAGTAGTTTTGGTGGTGGTTTGCAAGTAATAAATAAATTGATACATCGACAAGACTGTGTGTTGCCACTGCTCTAAGTTGCGTGGATCGAAACAAAAGACATAGCAATAGAATTAAGATGCAGCAGAGTTCAAGATCACGAAAAGCGGCATTGAGAGTCAGAGTTCCTTCGCGGAAGCTCATGATTCTCTCTCTCGCCATTTTCGCCATTCTCCCTCCCATTTTCTTCCACTTCCGCCTCCGACGCCTCCAACAGCTGCAACTCACAAAGTGCCGTTGGCTCAACGATCCTCCTCTAGTCTGCGCCCACGGTGGCGATTCCTCCAAGGCTTCTCCAAACACTATGGCGTCGTATTTCCACGCTCTTCAGTCTCGCGTCGACTGCATTGAGATCGACGTTTCTCGTTCTTCTGACGGAGTTCTCTTTGCTCTCCATGACAGGGATTTGCAGCGCTTAAATGGAAACACTAGTTCTAAAGTTGGTTACATGAACTCAGAAGAGATAAGAAAGCTCAGTGCTTCACATCAGTCTACCTCAAAGTTTACTGATGAAAGTATACTTACAATCCAAGATGCTCTGATGTTGACTGCAAATTCAGTACGACAGATAGTTCTAGATGTTAAGGTTGGACCCCCGTTTTATGAGAAAAAGCTTGCCAAAGATGTTCTCTCTATTGTTATATTGCCCAAGGAAAAAAATAATCTCATAATCGAACCGCAGAAGTTTAGTAGCCCATCTATCTTGTTCTCGAGTATGCCACCCTTGAGAGACATCTGTAATGGAAGGCATTCCCCTTGCGTATGTAGAAGCTAGTTGCATGCGCAGGCAAAGTTTCTTACCGGAGAAGTTGGGTGACCTAGTTGAGAAAGGATGACACCAATAGCAGTGGTGAACACATCTGTTTCGTCATCAAAAGGAAGAGCAAATTAAGGAAGCTGCAAGACTGGAACAGTGGTCATAGCTTTTTTTAAAACTGTAAAAGCTGATTCGGAATTTGTAT

Coding sequences of Glyma04g12200

Limit To All Plant Sequences

>Glyma04g12200.1   sequence type=CDS   gene model=Glyma04g12200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGAGTTCAAGATCACGAAAAGCGGCATTGAGAGTCAGAGTTCCTTCGCGGAAGCTCATGATTCTCTCTCTCGCCATTTTCGCCATTCTCCCTCCCATTTTCTTCCACTTCCGCCTCCGACGCCTCCAACAGCTGCAACTCACAAAGTGCCGTTGGCTCAACGATCCTCCTCTAGTCTGCGCCCACGGTGGCGATTCCTCCAAGGCTTCTCCAAACACTATGGCGTCGTATTTCCACGCTCTTCAGTCTCGCGTCGACTGCATTGAGATCGACGTTTCTCGTTCTTCTGACGGAGTTCTCTTTGCTCTCCATGACAGGGATTTGCAGCGCTTAAATGGAAACACTAGTTCTAAAGTTGGTTACATGAACTCAGAAGAGATAAGAAAGCTCAGTGCTTCACATCAGTCTACCTCAAAGTTTACTGATGAAAGTATACTTACAATCCAAGATGCTCTGATGTTGACTGCAAATTCAGTACGACAGATAGTTCTAGATGTTAAGGTTGGACCCCCGTTTTATGAGAAAAAGCTTGCCAAAGATGTTCTCTCTATTGTGGAGAAGACGGAGTGCAGCAACTGCCTCATATGGGCTAAAAGTGACATTTTAGCAAGGGATGTAATTAAACTCTCATCAGAAATTACAGTTGGCTACATTGTTATGAGGGATCCTTCTACTGGAGCTAGGACAAATTTGTTGAGAATGAAAGGTGCTGAGGTTGTTGGTGTCTATCATCCACTGATTGATGAAAAGCTTATGAAAGTTTTGCACTGGAGGAACAAAAAGGTGTATGCCTGGACAGTTGATGATGCAGAATCCATGCAAAAGATGTTGTTTGAACATGTTGATGCTATTGTTACGAGCAACCCAACTGTTCTTCAACGCCTAATGCAAGATATCAAAACACAATGTCTTGAAGAAGGTTATTCATTACCACGCTAA

>Glyma04g12200.2   sequence type=CDS   gene model=Glyma04g12200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGAGTTCAAGATCACGAAAAGCGGCATTGAGAGTCAGAGTTCCTTCGCGGAAGCTCATGATTCTCTCTCTCGCCATTTTCGCCATTCTCCCTCCCATTTTCTTCCACTTCCGCCTCCGACGCCTCCAACAGCTGCAACTCACAAAGTGCCGTTGGCTCAACGATCCTCCTCTAGTCTGCGCCCACGGTGGCGATTCCTCCAAGGCTTCTCCAAACACTATGGCGTCGTATTTCCACGCTCTTCAGTCTCGCGTCGACTGCATTGAGATCGACGTTTCTCGTTCTTCTGACGGAGTTCTCTTTGCTCTCCATGACAGGGATTTGCAGCGCTTAAATGGAAACACTAGTTCTAAAGTTGGTTACATGAACTCAGAAGAGATAAGAAAGCTCAGTGCTTCACATCAGTCTACCTCAAAGTTTACTGATGAAAGTATACTTACAATCCAAGATGCTCTGATGTTGACTGCAAATTCAGTACGACAGATAGTTCTAGATGTTAAGGTTGGACCCCCGTTTTATGAGAAAAAGCTTGCCAAAGATGTTCTCTCTATTGTGGAGAAGACGGAGTGCAGCAACTGCCTCATATGGGCTAAAAGTGACATTTTAGCAAGGGATGTAATTAAACTCTCATCAGAAATTACAGTTGGCTACATTGTTATGAGGGATCCTTCTACTGGAGCTAGGACAAATTTGTTGAGAATGAAAGGTGCTGAGGTTGTTGGTGTCTATCATCCACTGATTGATGAAAAGCTTATGAAAGTTTTGCACTGGAGGAACAAAAAGGTGTATGCCTGGACAGTTGATGATGCAGAATCCATGCAAAAGATGTTGTTTGAACATGTTGATGCTATTGTTACGAGCAACCCAACTGTTCTTCAACGCCTAATGCAAGATATCAAAACACAATGTCTTGAAGAAGGTGATTAA

>Glyma04g12200.3   sequence type=CDS   gene model=Glyma04g12200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGAGTTCAAGATCACGAAAAGCGGCATTGAGAGTCAGAGTTCCTTCGCGGAAGCTCATGATTCTCTCTCTCGCCATTTTCGCCATTCTCCCTCCCATTTTCTTCCACTTCCGCCTCCGACGCCTCCAACAGCTGCAACTCACAAAGTGCCGTTGGCTCAACGATCCTCCTCTAGTCTGCGCCCACGGTGGCGATTCCTCCAAGGCTTCTCCAAACACTATGGCGTCGTATTTCCACGCTCTTCAGTCTCGCGTCGACTGCATTGAGATCGACGTTTCTCGTTCTTCTGACGGAGTTCTCTTTGCTCTCCATGACAGGGATTTGCAGCGCTTAAATGGAAACACTAGTTCTAAAGTTGGTTACATGAACTCAGAAGAGATAAGAAAGCTCAGTGCTTCACATCAGTCTACCTCAAAGTTTACTGATGAAAGTATACTTACAATCCAAGATGCTCTGATGTTGACTGCAAATTCAGTACGACAGATAGTTCTAGATGTTAAGGTTGGACCCCCGTTTTATGAGAAAAAGCTTGCCAAAGATGTTCTCTCTATTGTTATATTGCCCAAGGAAAAAAATAATCTCATAATCGAACCGCAGAAGTTTAGTAGCCCATCTATCTTGTTCTCGAGTATGCCACCCTTGAGAGACATCTGTAATGGAAGGCATTCCCCTTGCGTATGTAGAAGCTAG

Predicted protein sequences of Glyma04g12200

Limit To All Plant Sequences

>Glyma04g12200.1   sequence type=predicted peptide   gene model=Glyma04g12200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQSSRSRKAALRVRVPSRKLMILSLAIFAILPPIFFHFRLRRLQQLQLTKCRWLNDPPLVCAHGGDSSKASPNTMASYFHALQSRVDCIEIDVSRSSDGVLFALHDRDLQRLNGNTSSKVGYMNSEEIRKLSASHQSTSKFTDESILTIQDALMLTANSVRQIVLDVKVGPPFYEKKLAKDVLSIVEKTECSNCLIWAKSDILARDVIKLSSEITVGYIVMRDPSTGARTNLLRMKGAEVVGVYHPLIDEKLMKVLHWRNKKVYAWTVDDAESMQKMLFEHVDAIVTSNPTVLQRLMQDIKTQCLEEGYSLPR*

>Glyma04g12200.2   sequence type=predicted peptide   gene model=Glyma04g12200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQSSRSRKAALRVRVPSRKLMILSLAIFAILPPIFFHFRLRRLQQLQLTKCRWLNDPPLVCAHGGDSSKASPNTMASYFHALQSRVDCIEIDVSRSSDGVLFALHDRDLQRLNGNTSSKVGYMNSEEIRKLSASHQSTSKFTDESILTIQDALMLTANSVRQIVLDVKVGPPFYEKKLAKDVLSIVEKTECSNCLIWAKSDILARDVIKLSSEITVGYIVMRDPSTGARTNLLRMKGAEVVGVYHPLIDEKLMKVLHWRNKKVYAWTVDDAESMQKMLFEHVDAIVTSNPTVLQRLMQDIKTQCLEEGD*

>Glyma04g12200.3   sequence type=predicted peptide   gene model=Glyma04g12200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQSSRSRKAALRVRVPSRKLMILSLAIFAILPPIFFHFRLRRLQQLQLTKCRWLNDPPLVCAHGGDSSKASPNTMASYFHALQSRVDCIEIDVSRSSDGVLFALHDRDLQRLNGNTSSKVGYMNSEEIRKLSASHQSTSKFTDESILTIQDALMLTANSVRQIVLDVKVGPPFYEKKLAKDVLSIVILPKEKNNLIIEPQKFSSPSILFSSMPPLRDICNGRHSPCVCRS*

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