SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G36070 | AT | Annotation by Michelle Graham. TAIR10: translocase inner membrane subunit 44-2 | chr2:15145119-15147895 REVERSE LENGTH=469 | SoyBase | E_val: 0 | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005743 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0005744 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane presequence translocase complex | SoyBase | N/A | ISS |
| GO:0015450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015462 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein-transmembrane transporting ATPase activity | SoyBase | N/A | ISS |
| KOG2580 | KOG | Mitochondrial import inner membrane translocase, subunit TIM44 | JGI | ISS | |
| PTHR10721 | Panther | MITOCHONDRIAL INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44 | JGI | ISS | |
| PF04280 | PFAM | Tim44-like domain | JGI | ISS | |
| UniRef100_G7IM56 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase subunit TIM44 n=1 Tax=Medicago truncatula RepID=G7IM56_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JVJ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVJ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g12120 not represented in the dataset |
Glyma04g12120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g107400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g12120.2 sequence type=transcript gene model=Glyma04g12120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGCAAGTACACTATTGATTCTCTTTCTTCTTGCAGCATAGCACAACACAGCAGTTACGCAAGGTCTTTATTTGTTCTTCCTCAAGCACCGGCAACGCAAACGGATGCATTACAAAAAATAAAATGAGATAAGAAATTAAAAGAAGACGACGTTCTCTCTCGGTTTTGATTCCCAATGGCAACGCGAAAGCTGATTCGTGATTTGTTACTCTCCAAACGATCCCTTCTTCACCACCAGGGTTGGAGTAGGAGTAGAAGGTTACCTTTGGTTTGGGAAGATAGGCGTAGATACAGTGTCTTCAATGAGTTCTCTAAGAACATTAAAGGCCAAGCTGTTAGAAACCAAGAATTCCAACAGTCTGTCAAGGAGCTGAAAGAAAAAGCAGATGAACTTAAAGGGGTAAAAGAAGAGCTGAAAGAAAGAACAAAGCAAAAAACTGAGAAGCTGTACAAACAAGTGGATGAAGCGTGGACAGAAGCTGAAGCTGCTGCAAGGAAGGTTTCTTACAATGTTAAAGAGAAGATTTCAGCTGCATCAGAGGAGGTGAAGGAAACTTTTGGGATAGGAAAGCAGGATTCTTCAGGATCAACTGATTCTTCAACAAAACAGGGTGCTGATGCAAATGGAGGAAATCAGACATCACGTGAGGAAGAGAAAAATCAGCAATCTGGGTCTAGTAAGGATGCTGATTCGTTGTTTGGCAAATTTAAATCAACTATTTCCTCTCCAAATGTTTCTGCTGCCTTCCAAAAATTAAAGGATGCAAAGTTAGTTGACATAACCAAAAAAGGTTATGACATAGTAAAAGAGGAGTTAAGTAGTACCCCGACTAAGAGAAAGCGAGTTCCTTTTGCATCAAGTGGTGAAACAAGTACAAGAACAGATCTTGTTGTTATGCCATCTAAACAATCTTGGTGGAGTAAGAAGTTTGATGAGTTCAGGGAGAAGGTGAAAGGCCATCCAGTATCCAAGCGATTCCTTAAGTATAGTGACCCAGTGAAGACAAAGGGCCAGGAGATAGTAGAGGACTTGCGGGAAAGATATGAGACCAGTGACAGCCCCATTATTCACAAAATACAGGATATCAATGACAGTATGTTTCAAGAGACAGATGCTGCAATTTCTTACAAGGAAATACGTCAACGGGATCCTTATTTTTCATTACCAGAATTTGTTGGGGAAGTACAGGAGGCAATAAAACCAGTGCTTAATGCTTACATCAAGGGAGACGTTGAAACATTAAAGAAGTATTGTAGCCCTGAGCTGATTGAACGTTGTAAAGCAGAGCATAATGCTTACCAAAGTCATGGTATATTCTTTGATAACAAGATTCTGCATGTATCTGATCTGGAAATAAGAGAGACCAAGATGATGGGCTCATCTCCAGTAATTATTGTAATGGAATGGGGCAATTACAGAAGGAGGCAAGGATACAATCCACACTGTATTCTATTTTTGGGCATTACAACAAATGGACCAAGAAGATCGTGGAGAAGATGGTATTTACCTAATGTGGAGACTCAGAGAGATGCAACAGCAAGGCATCCAAGCTCTCATCTAGATTTTGTCATGATTTTCAGGGATTTGTATAATTGAACCTTTATGTCATATACTACATTTACTGATTTCATTTCTTGGGGCAAAGTTGTATCCCGATGATACATCCTTTAATTTTTTTTATTACTAACTAGAAAAATAATTTGCACTTGAGTTCATTGATGTATGTTAGATGAGCTAGACAACGTTTTTATTCTGCTCTCAAGCCAGAAATGACAAATTGTTAATATAGTCACAAGTTATTTATTTATAATAGTAATTACTAG
>Glyma04g12120.1 sequence type=CDS gene model=Glyma04g12120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACGCGAAAGCTGATTCGTGATTTGTTACTCTCCAAACGATCCCTTCTTCACCACCAGGGTTGGAGTAGGAGTAGAAGGTTACCTTTGGTTTGGGAAGATAGGCGTAGATACAGTGTCTTCAATGAGTTCTCTAAGAACATTAAAGGCCAAGCTGTTAGAAACCAAGAATTCCAACAGTCTGTCAAGGAGCTGAAAGAAAAAGCAGATGAACTTAAAGGGGTAAAAGAAGAGCTGAAAGAAAGAACAAAGCAAAAAACTGAGAAGCTGTACAAACAAGTGGATGAAGCGTGGACAGAAGCTGAAGCTGCTGCAAGGAAGGTTTCTTACAATGTTAAAGAGAAGATTTCAGCTGCATCAGAGGAGGTGAAGGAAACTTTTGGGATAGGAAAGCAGGATTCTTCAGGATCAACTGATTCTTCAACAAAACAGGGTGCTGATGCAAATGGAGGAAATCAGACATCACGTGAGGAAGAGAAAAATCAGCAATCTGGGTCTAGTAAGGATGCTGATTCGTTGTTTGGCAAATTTAAATCAACTATTTCCTCTCCAAATGTTTCTGCTGCCTTCCAAAAATTAAAGGATGCAAAGTTAGTTGACATAACCAAAAAAGGTTATGACATAGTAAAAGAGGAGTTAAGTAGTACCCCGACTAAGAGAAAGCGAGTTCCTTTTGCATCAAGTGGTGAAACAAGTACAAGAACAGATCTTGTTGTTATGCCATCTAAACAATCTTGGTGGAGTAAGAAGTTTGATGAGTTCAGGGAGAAGGTGAAAGGCCATCCAGTATCCAAGCGATTCCTTAAGTATAGTGACCCAGTGAAGACAAAGGGCCAGGAGATAGTAGAGGACTTGCGGGAAAGATATGAGACCAGTGACAGCCCCATTATTCACAAAATACAGGATATCAATGACAGTATGTTTCAAGAGACAGATGCTGCAATTTCTTACAAGGAAATACGTCAACGGGATCCTTATTTTTCATTACCAGAATTTGTTGGGGAAGTACAGGAGGCAATAAAACCAGTGCTTAATGCTTACATCAAGGGAGACGTTGAAACATTAAAGAAGTATTGTAGCCCTGAGCTGATTGAACGTTGTAAAGCAGAGCATAATGCTTACCAAAGTCATGGTATATTCTTTGATAACAAGATTCTGCATGTATCTGATCTGGAAATAAGAGAGACCAAGATGATGGGCTCATCTCCAGTAATTATTGTAATGTTTCAAACTCAGCAAATCTATTGTGTACGTGATAGGAATGGGGCAATTACAGAAGGAGGCAAGGATACAATCCACACTGTATTCTATTTTTGGGCATTACAACAAATGGACCAAGAAGATCGTGGAGAAGATGGTATTTACCTAATGTGGAGACTCAGAGAGATGCAACAGCAAGGCATCCAAGCTCTCATCTAG >Glyma04g12120.2 sequence type=CDS gene model=Glyma04g12120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACGCGAAAGCTGATTCGTGATTTGTTACTCTCCAAACGATCCCTTCTTCACCACCAGGGTTGGAGTAGGAGTAGAAGGTTACCTTTGGTTTGGGAAGATAGGCGTAGATACAGTGTCTTCAATGAGTTCTCTAAGAACATTAAAGGCCAAGCTGTTAGAAACCAAGAATTCCAACAGTCTGTCAAGGAGCTGAAAGAAAAAGCAGATGAACTTAAAGGGGTAAAAGAAGAGCTGAAAGAAAGAACAAAGCAAAAAACTGAGAAGCTGTACAAACAAGTGGATGAAGCGTGGACAGAAGCTGAAGCTGCTGCAAGGAAGGTTTCTTACAATGTTAAAGAGAAGATTTCAGCTGCATCAGAGGAGGTGAAGGAAACTTTTGGGATAGGAAAGCAGGATTCTTCAGGATCAACTGATTCTTCAACAAAACAGGGTGCTGATGCAAATGGAGGAAATCAGACATCACGTGAGGAAGAGAAAAATCAGCAATCTGGGTCTAGTAAGGATGCTGATTCGTTGTTTGGCAAATTTAAATCAACTATTTCCTCTCCAAATGTTTCTGCTGCCTTCCAAAAATTAAAGGATGCAAAGTTAGTTGACATAACCAAAAAAGGTTATGACATAGTAAAAGAGGAGTTAAGTAGTACCCCGACTAAGAGAAAGCGAGTTCCTTTTGCATCAAGTGGTGAAACAAGTACAAGAACAGATCTTGTTGTTATGCCATCTAAACAATCTTGGTGGAGTAAGAAGTTTGATGAGTTCAGGGAGAAGGTGAAAGGCCATCCAGTATCCAAGCGATTCCTTAAGTATAGTGACCCAGTGAAGACAAAGGGCCAGGAGATAGTAGAGGACTTGCGGGAAAGATATGAGACCAGTGACAGCCCCATTATTCACAAAATACAGGATATCAATGACAGTATGTTTCAAGAGACAGATGCTGCAATTTCTTACAAGGAAATACGTCAACGGGATCCTTATTTTTCATTACCAGAATTTGTTGGGGAAGTACAGGAGGCAATAAAACCAGTGCTTAATGCTTACATCAAGGGAGACGTTGAAACATTAAAGAAGTATTGTAGCCCTGAGCTGATTGAACGTTGTAAAGCAGAGCATAATGCTTACCAAAGTCATGGTATATTCTTTGATAACAAGATTCTGCATGTATCTGATCTGGAAATAAGAGAGACCAAGATGATGGGCTCATCTCCAGTAATTATTGTAATGGAATGGGGCAATTACAGAAGGAGGCAAGGATACAATCCACACTGTATTCTATTTTTGGGCATTACAACAAATGGACCAAGAAGATCGTGGAGAAGATGGTATTTACCTAATGTGGAGACTCAGAGAGATGCAACAGCAAGGCATCCAAGCTCTCATCTAGATTTTGTCATGATTTTCAGGGATTTGTATAATTGA
>Glyma04g12120.1 sequence type=predicted peptide gene model=Glyma04g12120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATRKLIRDLLLSKRSLLHHQGWSRSRRLPLVWEDRRRYSVFNEFSKNIKGQAVRNQEFQQSVKELKEKADELKGVKEELKERTKQKTEKLYKQVDEAWTEAEAAARKVSYNVKEKISAASEEVKETFGIGKQDSSGSTDSSTKQGADANGGNQTSREEEKNQQSGSSKDADSLFGKFKSTISSPNVSAAFQKLKDAKLVDITKKGYDIVKEELSSTPTKRKRVPFASSGETSTRTDLVVMPSKQSWWSKKFDEFREKVKGHPVSKRFLKYSDPVKTKGQEIVEDLRERYETSDSPIIHKIQDINDSMFQETDAAISYKEIRQRDPYFSLPEFVGEVQEAIKPVLNAYIKGDVETLKKYCSPELIERCKAEHNAYQSHGIFFDNKILHVSDLEIRETKMMGSSPVIIVMFQTQQIYCVRDRNGAITEGGKDTIHTVFYFWALQQMDQEDRGEDGIYLMWRLREMQQQGIQALI* >Glyma04g12120.2 sequence type=predicted peptide gene model=Glyma04g12120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATRKLIRDLLLSKRSLLHHQGWSRSRRLPLVWEDRRRYSVFNEFSKNIKGQAVRNQEFQQSVKELKEKADELKGVKEELKERTKQKTEKLYKQVDEAWTEAEAAARKVSYNVKEKISAASEEVKETFGIGKQDSSGSTDSSTKQGADANGGNQTSREEEKNQQSGSSKDADSLFGKFKSTISSPNVSAAFQKLKDAKLVDITKKGYDIVKEELSSTPTKRKRVPFASSGETSTRTDLVVMPSKQSWWSKKFDEFREKVKGHPVSKRFLKYSDPVKTKGQEIVEDLRERYETSDSPIIHKIQDINDSMFQETDAAISYKEIRQRDPYFSLPEFVGEVQEAIKPVLNAYIKGDVETLKKYCSPELIERCKAEHNAYQSHGIFFDNKILHVSDLEIRETKMMGSSPVIIVMEWGNYRRRQGYNPHCILFLGITTNGPRRSWRRWYLPNVETQRDATARHPSSHLDFVMIFRDLYN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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