Glyma04g12120 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g12120

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11095532
stop:	11107446
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36070	AT	Annotation by Michelle Graham. TAIR10: translocase inner membrane subunit 44-2 \| chr2:15145119-15147895 REVERSE LENGTH=469	SoyBase	E_val: 0	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0005744	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane presequence translocase complex	SoyBase	N/A	ISS
GO:0015450	GO-mf	Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015462	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein-transmembrane transporting ATPase activity	SoyBase	N/A	ISS
KOG2580	KOG	Mitochondrial import inner membrane translocase, subunit TIM44	JGI		ISS
PTHR10721	Panther	MITOCHONDRIAL INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44	JGI		ISS
PF04280	PFAM	Tim44-like domain	JGI		ISS
UniRef100_G7IM56	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase subunit TIM44 n=1 Tax=Medicago truncatula RepID=G7IM56_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JVJ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVJ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g12120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g107400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g12120

Limit To All Plant Sequences

>Glyma04g12120.2   sequence type=transcript   gene model=Glyma04g12120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCAAGTACACTATTGATTCTCTTTCTTCTTGCAGCATAGCACAACACAGCAGTTACGCAAGGTCTTTATTTGTTCTTCCTCAAGCACCGGCAACGCAAACGGATGCATTACAAAAAATAAAATGAGATAAGAAATTAAAAGAAGACGACGTTCTCTCTCGGTTTTGATTCCCAATGGCAACGCGAAAGCTGATTCGTGATTTGTTACTCTCCAAACGATCCCTTCTTCACCACCAGGGTTGGAGTAGGAGTAGAAGGTTACCTTTGGTTTGGGAAGATAGGCGTAGATACAGTGTCTTCAATGAGTTCTCTAAGAACATTAAAGGCCAAGCTGTTAGAAACCAAGAATTCCAACAGTCTGTCAAGGAGCTGAAAGAAAAAGCAGATGAACTTAAAGGGGTAAAAGAAGAGCTGAAAGAAAGAACAAAGCAAAAAACTGAGAAGCTGTACAAACAAGTGGATGAAGCGTGGACAGAAGCTGAAGCTGCTGCAAGGAAGGTTTCTTACAATGTTAAAGAGAAGATTTCAGCTGCATCAGAGGAGGTGAAGGAAACTTTTGGGATAGGAAAGCAGGATTCTTCAGGATCAACTGATTCTTCAACAAAACAGGGTGCTGATGCAAATGGAGGAAATCAGACATCACGTGAGGAAGAGAAAAATCAGCAATCTGGGTCTAGTAAGGATGCTGATTCGTTGTTTGGCAAATTTAAATCAACTATTTCCTCTCCAAATGTTTCTGCTGCCTTCCAAAAATTAAAGGATGCAAAGTTAGTTGACATAACCAAAAAAGGTTATGACATAGTAAAAGAGGAGTTAAGTAGTACCCCGACTAAGAGAAAGCGAGTTCCTTTTGCATCAAGTGGTGAAACAAGTACAAGAACAGATCTTGTTGTTATGCCATCTAAACAATCTTGGTGGAGTAAGAAGTTTGATGAGTTCAGGGAGAAGGTGAAAGGCCATCCAGTATCCAAGCGATTCCTTAAGTATAGTGACCCAGTGAAGACAAAGGGCCAGGAGATAGTAGAGGACTTGCGGGAAAGATATGAGACCAGTGACAGCCCCATTATTCACAAAATACAGGATATCAATGACAGTATGTTTCAAGAGACAGATGCTGCAATTTCTTACAAGGAAATACGTCAACGGGATCCTTATTTTTCATTACCAGAATTTGTTGGGGAAGTACAGGAGGCAATAAAACCAGTGCTTAATGCTTACATCAAGGGAGACGTTGAAACATTAAAGAAGTATTGTAGCCCTGAGCTGATTGAACGTTGTAAAGCAGAGCATAATGCTTACCAAAGTCATGGTATATTCTTTGATAACAAGATTCTGCATGTATCTGATCTGGAAATAAGAGAGACCAAGATGATGGGCTCATCTCCAGTAATTATTGTAATGGAATGGGGCAATTACAGAAGGAGGCAAGGATACAATCCACACTGTATTCTATTTTTGGGCATTACAACAAATGGACCAAGAAGATCGTGGAGAAGATGGTATTTACCTAATGTGGAGACTCAGAGAGATGCAACAGCAAGGCATCCAAGCTCTCATCTAGATTTTGTCATGATTTTCAGGGATTTGTATAATTGAACCTTTATGTCATATACTACATTTACTGATTTCATTTCTTGGGGCAAAGTTGTATCCCGATGATACATCCTTTAATTTTTTTTATTACTAACTAGAAAAATAATTTGCACTTGAGTTCATTGATGTATGTTAGATGAGCTAGACAACGTTTTTATTCTGCTCTCAAGCCAGAAATGACAAATTGTTAATATAGTCACAAGTTATTTATTTATAATAGTAATTACTAG

Coding sequences of Glyma04g12120

Limit To All Plant Sequences

>Glyma04g12120.1   sequence type=CDS   gene model=Glyma04g12120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGCGAAAGCTGATTCGTGATTTGTTACTCTCCAAACGATCCCTTCTTCACCACCAGGGTTGGAGTAGGAGTAGAAGGTTACCTTTGGTTTGGGAAGATAGGCGTAGATACAGTGTCTTCAATGAGTTCTCTAAGAACATTAAAGGCCAAGCTGTTAGAAACCAAGAATTCCAACAGTCTGTCAAGGAGCTGAAAGAAAAAGCAGATGAACTTAAAGGGGTAAAAGAAGAGCTGAAAGAAAGAACAAAGCAAAAAACTGAGAAGCTGTACAAACAAGTGGATGAAGCGTGGACAGAAGCTGAAGCTGCTGCAAGGAAGGTTTCTTACAATGTTAAAGAGAAGATTTCAGCTGCATCAGAGGAGGTGAAGGAAACTTTTGGGATAGGAAAGCAGGATTCTTCAGGATCAACTGATTCTTCAACAAAACAGGGTGCTGATGCAAATGGAGGAAATCAGACATCACGTGAGGAAGAGAAAAATCAGCAATCTGGGTCTAGTAAGGATGCTGATTCGTTGTTTGGCAAATTTAAATCAACTATTTCCTCTCCAAATGTTTCTGCTGCCTTCCAAAAATTAAAGGATGCAAAGTTAGTTGACATAACCAAAAAAGGTTATGACATAGTAAAAGAGGAGTTAAGTAGTACCCCGACTAAGAGAAAGCGAGTTCCTTTTGCATCAAGTGGTGAAACAAGTACAAGAACAGATCTTGTTGTTATGCCATCTAAACAATCTTGGTGGAGTAAGAAGTTTGATGAGTTCAGGGAGAAGGTGAAAGGCCATCCAGTATCCAAGCGATTCCTTAAGTATAGTGACCCAGTGAAGACAAAGGGCCAGGAGATAGTAGAGGACTTGCGGGAAAGATATGAGACCAGTGACAGCCCCATTATTCACAAAATACAGGATATCAATGACAGTATGTTTCAAGAGACAGATGCTGCAATTTCTTACAAGGAAATACGTCAACGGGATCCTTATTTTTCATTACCAGAATTTGTTGGGGAAGTACAGGAGGCAATAAAACCAGTGCTTAATGCTTACATCAAGGGAGACGTTGAAACATTAAAGAAGTATTGTAGCCCTGAGCTGATTGAACGTTGTAAAGCAGAGCATAATGCTTACCAAAGTCATGGTATATTCTTTGATAACAAGATTCTGCATGTATCTGATCTGGAAATAAGAGAGACCAAGATGATGGGCTCATCTCCAGTAATTATTGTAATGTTTCAAACTCAGCAAATCTATTGTGTACGTGATAGGAATGGGGCAATTACAGAAGGAGGCAAGGATACAATCCACACTGTATTCTATTTTTGGGCATTACAACAAATGGACCAAGAAGATCGTGGAGAAGATGGTATTTACCTAATGTGGAGACTCAGAGAGATGCAACAGCAAGGCATCCAAGCTCTCATCTAG

>Glyma04g12120.2   sequence type=CDS   gene model=Glyma04g12120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGCGAAAGCTGATTCGTGATTTGTTACTCTCCAAACGATCCCTTCTTCACCACCAGGGTTGGAGTAGGAGTAGAAGGTTACCTTTGGTTTGGGAAGATAGGCGTAGATACAGTGTCTTCAATGAGTTCTCTAAGAACATTAAAGGCCAAGCTGTTAGAAACCAAGAATTCCAACAGTCTGTCAAGGAGCTGAAAGAAAAAGCAGATGAACTTAAAGGGGTAAAAGAAGAGCTGAAAGAAAGAACAAAGCAAAAAACTGAGAAGCTGTACAAACAAGTGGATGAAGCGTGGACAGAAGCTGAAGCTGCTGCAAGGAAGGTTTCTTACAATGTTAAAGAGAAGATTTCAGCTGCATCAGAGGAGGTGAAGGAAACTTTTGGGATAGGAAAGCAGGATTCTTCAGGATCAACTGATTCTTCAACAAAACAGGGTGCTGATGCAAATGGAGGAAATCAGACATCACGTGAGGAAGAGAAAAATCAGCAATCTGGGTCTAGTAAGGATGCTGATTCGTTGTTTGGCAAATTTAAATCAACTATTTCCTCTCCAAATGTTTCTGCTGCCTTCCAAAAATTAAAGGATGCAAAGTTAGTTGACATAACCAAAAAAGGTTATGACATAGTAAAAGAGGAGTTAAGTAGTACCCCGACTAAGAGAAAGCGAGTTCCTTTTGCATCAAGTGGTGAAACAAGTACAAGAACAGATCTTGTTGTTATGCCATCTAAACAATCTTGGTGGAGTAAGAAGTTTGATGAGTTCAGGGAGAAGGTGAAAGGCCATCCAGTATCCAAGCGATTCCTTAAGTATAGTGACCCAGTGAAGACAAAGGGCCAGGAGATAGTAGAGGACTTGCGGGAAAGATATGAGACCAGTGACAGCCCCATTATTCACAAAATACAGGATATCAATGACAGTATGTTTCAAGAGACAGATGCTGCAATTTCTTACAAGGAAATACGTCAACGGGATCCTTATTTTTCATTACCAGAATTTGTTGGGGAAGTACAGGAGGCAATAAAACCAGTGCTTAATGCTTACATCAAGGGAGACGTTGAAACATTAAAGAAGTATTGTAGCCCTGAGCTGATTGAACGTTGTAAAGCAGAGCATAATGCTTACCAAAGTCATGGTATATTCTTTGATAACAAGATTCTGCATGTATCTGATCTGGAAATAAGAGAGACCAAGATGATGGGCTCATCTCCAGTAATTATTGTAATGGAATGGGGCAATTACAGAAGGAGGCAAGGATACAATCCACACTGTATTCTATTTTTGGGCATTACAACAAATGGACCAAGAAGATCGTGGAGAAGATGGTATTTACCTAATGTGGAGACTCAGAGAGATGCAACAGCAAGGCATCCAAGCTCTCATCTAGATTTTGTCATGATTTTCAGGGATTTGTATAATTGA

Predicted protein sequences of Glyma04g12120

Limit To All Plant Sequences

>Glyma04g12120.1   sequence type=predicted peptide   gene model=Glyma04g12120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRKLIRDLLLSKRSLLHHQGWSRSRRLPLVWEDRRRYSVFNEFSKNIKGQAVRNQEFQQSVKELKEKADELKGVKEELKERTKQKTEKLYKQVDEAWTEAEAAARKVSYNVKEKISAASEEVKETFGIGKQDSSGSTDSSTKQGADANGGNQTSREEEKNQQSGSSKDADSLFGKFKSTISSPNVSAAFQKLKDAKLVDITKKGYDIVKEELSSTPTKRKRVPFASSGETSTRTDLVVMPSKQSWWSKKFDEFREKVKGHPVSKRFLKYSDPVKTKGQEIVEDLRERYETSDSPIIHKIQDINDSMFQETDAAISYKEIRQRDPYFSLPEFVGEVQEAIKPVLNAYIKGDVETLKKYCSPELIERCKAEHNAYQSHGIFFDNKILHVSDLEIRETKMMGSSPVIIVMFQTQQIYCVRDRNGAITEGGKDTIHTVFYFWALQQMDQEDRGEDGIYLMWRLREMQQQGIQALI*

>Glyma04g12120.2   sequence type=predicted peptide   gene model=Glyma04g12120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRKLIRDLLLSKRSLLHHQGWSRSRRLPLVWEDRRRYSVFNEFSKNIKGQAVRNQEFQQSVKELKEKADELKGVKEELKERTKQKTEKLYKQVDEAWTEAEAAARKVSYNVKEKISAASEEVKETFGIGKQDSSGSTDSSTKQGADANGGNQTSREEEKNQQSGSSKDADSLFGKFKSTISSPNVSAAFQKLKDAKLVDITKKGYDIVKEELSSTPTKRKRVPFASSGETSTRTDLVVMPSKQSWWSKKFDEFREKVKGHPVSKRFLKYSDPVKTKGQEIVEDLRERYETSDSPIIHKIQDINDSMFQETDAAISYKEIRQRDPYFSLPEFVGEVQEAIKPVLNAYIKGDVETLKKYCSPELIERCKAEHNAYQSHGIFFDNKILHVSDLEIRETKMMGSSPVIIVMEWGNYRRRQGYNPHCILFLGITTNGPRRSWRRWYLPNVETQRDATARHPSSHLDFVMIFRDLYN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain