Glyma04g12110 - SoyBase

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Report for Sequence Feature Glyma04g12110

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11072700
stop:	11075871
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G36310	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:13669644-13670934 FORWARD LENGTH=404	SoyBase	E_val: 3.00E-147	ISS
GO:0002098	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA wobble uridine modification	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tRNA methyltransferase activity	SoyBase	N/A	ISS
KOG1331	KOG	Predicted methyltransferase	JGI		ISS
PTHR13069	Panther	UNCHARACTERIZED	JGI		ISS
PF08241	PFAM	Methyltransferase domain	JGI		ISS
UniRef100_B9RJD9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RJD9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339AC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339AC8 related cluster n=1 Tax=unknown RepID=UPI0002339AC8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12110

Paralog	Evidence	Comments
Glyma06g11230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g107300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g12110

Limit To All Plant Sequences

>Glyma04g12110.1   sequence type=CDS   gene model=Glyma04g12110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCACAGTGTTCTAAAAGCAAGTAGGTTCCTCAATCCACGTAGACAAACCCTTGGTTTGACTATTTCCGTTAGTGGTTGTGTTTATCGTTTAGCATTTAGTTCAATGAAAGAAATCAATTGTAAAGTGGATTCTAGTTCATGTACTCTTGCCCCCAATAGGGAACCCTGCATTACAGATTCCTTATCAGTCAGCGGGAATTGCACTACTTCATCTACGAGTGTAAAATCCACCCCTGAAATTGAAAAGAAGTATGTTCATCATGTATATGATGCTATTGCGCCGCATTTCAGTGCCACCCGGTTCGCCAAGTGGCCGAAGGTTGCAGCATTTTTGTCATCTTTGCCTTTGGGATCTCTTGTCTTTGATGCGGGATGTGGGAATGGGAAATACTTAGGTTTGAATCAGGATTGTTTTTTCATAGGATGTGATATAAGTCCTTCCTTGATTAAGATCTGCTTGGATAGAGAGCATGAAGTTCTGGTTGCAGATGCTGTGAATCTCCCTTACAGGACTGGTTTCGGCGATGTGGCAATATCTATAGCTGTGTTACATCATTTAAGCACTGAAAATAGAAGGAGAAAGGCAATAGAAGAATTGGTCAGAGTTGTTAAAAAGGGTGGCCTTGTTCTGATTACAGTTTGGGCTGTAGAGCAAGAGGATAGTAAGCTGATTACCAAATGGACACCACTGAATGAGAAGTATGTTGATGAGTGGGTAGGACCAGGAAGTCCTCGTACTCGGGCGCCTTCATCCTCATCATTGGAAAGTATCCCCGAAAGTGAGGTGAGTCGCTCTGGTGAGCACATGGAAGTTTGCAATGAGCCACATGTATCAAGAGATTTGGAGGAAGAAAAAAATATAAAGAATCAACAGGAATACTTTGTTCCCTGGCATTTACCTTATCATCGTGCTGAAATCAGTGGTGCTTCTGCTGAAGCTCTTGCTGCTGGTCTGGCAACGAAAGATGACAAAAAAGGTGCTGTGGTGTATAATCGATATTATCATGTTTTTAGTGAAGGCGAGCTTGAAAGTTTGACAACTGGAATAAACAATGCCAGAATTGTTGATCAGTTTTTTGATAAATCCAACTGGTGTATTATTCTTGAGAAGACAGTGTGA

Predicted protein sequences of Glyma04g12110

Limit To All Plant Sequences

>Glyma04g12110.1   sequence type=predicted peptide   gene model=Glyma04g12110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIHSVLKASRFLNPRRQTLGLTISVSGCVYRLAFSSMKEINCKVDSSSCTLAPNREPCITDSLSVSGNCTTSSTSVKSTPEIEKKYVHHVYDAIAPHFSATRFAKWPKVAAFLSSLPLGSLVFDAGCGNGKYLGLNQDCFFIGCDISPSLIKICLDREHEVLVADAVNLPYRTGFGDVAISIAVLHHLSTENRRRKAIEELVRVVKKGGLVLITVWAVEQEDSKLITKWTPLNEKYVDEWVGPGSPRTRAPSSSSLESIPESEVSRSGEHMEVCNEPHVSRDLEEEKNIKNQQEYFVPWHLPYHRAEISGASAEALAAGLATKDDKKGAVVYNRYYHVFSEGELESLTTGINNARIVDQFFDKSNWCIILEKTV*

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