Glyma04g12100 - SoyBase

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Report for Sequence Feature Glyma04g12100

Feature Type:	gene_model
Chromosome:	Gm04
Start:	11058269
stop:	11070001
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g12100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22060	AT	Annotation by Michelle Graham. TAIR10: LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). \| chr1:7773373-7780586 REVERSE LENGTH=1999	SoyBase	E_val: 0	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
UniRef100_B9RJE4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RJE4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A246	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A246 related cluster n=1 Tax=unknown RepID=UPI000233A246	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g12100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g12100

Paralog	Evidence	Comments
Glyma06g11220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g12100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g107100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g12100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g12100

Limit To All Plant Sequences

>Glyma04g12100.2   sequence type=CDS   gene model=Glyma04g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAGGGTTACTAAGTGGAAGATTGAGAAGACAAAAGTAAAGGTTGTTTTCCGGCTCCAATTTCATGCTACACATATTCCACAGTCAGGATGGGATAAACTGTTCATCTCTTTCATTCCTGCTGACTCTGGGAAGGCTACATCAAAGACAACCAAAGCAAATGTGAGAAATGGAACCTGCAAGTGGGCAGATCCAATCTACGAAACTACAAGACTCCTCCAAGACATTAAAACTAGACAATATGAGGAAAAGTTTTATAAATTTGTTGTGGCGATGGGTTCGTCAAGATCTAGCATCCTTGGCGAGGCCAACATCAATCTAGCTGATTTTGTTGATGCCTTGAAGCCAACAGCTGTTGCTTTGCCTCTTAATGGAAGTGAACCTGGAGTCGCACTACATGTTACAGTGCAGCTTCTCACTTCCAAAACTGGTTTCAGAGAATTTGAGCAGCAGAGGGAACTCAGAGAGAGGGGTCTACAGACAACCTCTGACCAAGGAACTCATGATGAATCTGCTGATAGCAAAGAGTCATCACCTGACCAGAATGCCAATAATCATATGAATAAGGTTCATTCAAGAGTGAAATTGAAAAGAGAATCTAAAGATCTCCCCCGTATTTCTTCACTTGAAGGAGAATCAGGGGTAAATGAAGATTATGCTGACTCAGCTGCTGGCTTTGATGGCTCGTCTAGTACTTCTGAAAGCATATATACAGAGAAGCATGATATCTCCAGTACACATGAAGTGGACAGTCTTAAAAGCACAATCTCTGGTGATTTAGGTGGACTATCCCTCAGTCAAAGTCCTCAGCCAGAGAAAGGAGAGGCACCTGATAATCAGTTTCCAGCACAGGGTAGTGAGCGGGTTCATGATTGGAGCATAGACTATTCAGCTGCCAATAGTTTGGCTGCTGCTTCTGAAGATAGGAGCAGTAACAGACTTATGGGAAATTTGGATGCAGTTGAGTCGTCTATTCTTGATCTAAAACTGAAGGTAAGTTCTTTGCAAAACCATGCTGATGAAATAGGTGTTGAAACACACAAGTTTTCTGAGCAACTTGCTGCTGAGATTTCATCAGGAGAAGAGTTAGTAAAGGAGGTTGCAGTACTAAAATCAGAGTGTTCAAAGTTTAGAGATGAGTTTGAGCAACTTAAAAGTTCTAAGTTGAGCTTAGCATTACCTCACAAAGAACCTACTGGTACAGATCGGGACAAATTATTTCAAAATTTACAGCATAAATGGCATAAGGGGCTTTTGCTCATGGAAGGGAAGATAAGAGATATTCAGAAAGTGTCTTTGGGATTTCCTGAAAGGGATTTTAGGTTCCTTAACTTGGAGTTAGAAGCACTGGCTGAGATTTTGCAGAATCTCAAACAAGAATCTGGAGAGCCAATTTCAGGGGCCAAAGTTGTCAACGAAAGAGAGAACAAGAAAATGGATATGCATAAAAGTGAACAATTTTTAACAGATATTGGGTCTGATACAGGTTTATTTCAACCTGAAAGCATGACTCATTATCTTACCATACCTGGCCTTGTGTCTCATGAGTTTGATTCTGTTGATCCTGCCCTTGCTATGAAAGAAAAAGTTTTTGAACTTCTAAGAGAGTTAGATGAGTCCAAAACTGAAAGGGAAAGCCTTGTACGGAAAATGGACCAGATGGAGTGCTACTATGAAGCTTTGATTCAGGAACTTGAGCAGAATCAAAGGCAGATGATGGCTGAGTTGCAGAACCTCAGGAATGAACATTCTACTTGTATGTACACAATTTCTGCTGGTAAGTCTGAGATGGAGAAAATGCACCAGAATATGAATGAGCAGATAATGAAATTTGCTGAAGACAAGCACATTTTGGAATCTCTGAACAGTGACTTTGAAAGAAGGGCTATTTCAGCTGAAGCAGCCCTTAAAAGGGCCAGATTGAACTATTCTATTGCTGTTGGTCAATTGCAAAAAGATCTTGAACTGCTTTCTTGCCAGGTTCTTTCTATGCATGAGACAAATGAAAATCTCATAAAGCAAACCCTTTCTGATTCTTCACTTCCAAACGCTGATGGTAGCCCAGAACCAGTGACATATCCTAAAATTTCAGAAGGTCGTACTTTCAATCGATCGCTATGTCAAAATCACAGTTCTTCCTTACAAAGACAACATTTGGGTGAAGACATTTTACTTAGCGATTTGAAAAGATCACTTCAGTTGCAAGAGGGGTTATACAGACAGGTTGAAGAAGAAATCAGTCAAATGCATTTTGTAAATATATACTCAGATGTGTTTTCTAAGGCTCTGCAAGAAACATTGCTTGAAGCAAGTCTTGACATTCAACTCATGAAAGAGAAAATTGTTCAACTCTCTCAGCAGCTGGAGCTTACAAATGAATCCAACGAGTTACTGGTGTTGAGGTTGCAGAATGCTATGAATGATATCCTCTCGCTAAATGAGTACAAGGAGATTTGCACTGCAAAGAGCAATGATATTGCTCTCCAGAACCAAATTTTAGAGGCAAATTTAAAAGATCTTGCTCATGAAAACAATCTCCTTACTGAGAAAATTAATGAGTTGGAAGTTCTTCTGACAGAGTATAGAAGTTATGAGGGCAAGTACATGGCATGCAGTACAGAAAACTCAGAGTTGAGAAGTTTATTGAAAAAAGAGAGCCTAGGAAAGAAACATCTTCATGATGAAATATCCATTTTGCAGGAAGAGTTAAAATCTATCAGAACTAAATTTGACGAGCAAGTTTCAATGAAGGATAATCTGCAGAATAATGCCATCTTTTTATCTAAAAAGTTGCAGAAATTGCTTGCATCATATGAAGAAAGACACAGTGAACTTTCTCTTTGTAGTAGATCTGCTTGTTTGGATTCAGAATGTGAAGATGTAGAAGGTCTCTTATTGCAACTAGAAGAGCTGCAACAAAGTGCATTTCATAGAATCCTACTACTCATTGAAGAGAAGGAGATTTTAGTGCATGAAAAACTTATGGCTCAAGTATCTTTAAATACCGCAGAATCAGATGTTCTAGTCATGAAACAGAAGGTTGAGCATGATTTGCAAGAGATGGTACAGAAGATAACTGTGTCAGGTGCCCTGTTGCAGAAACTTCAGTTAAATTTTGAGGTGATCATTAACAGGATTAATGCTGGTTTTGAAGCTGAAGAATTATATTCTCAGCATCACAAAGAGTTTTTGTCTGGTCTGGACCATTTGGAAGCTGAGCTACAACAACTTAATTCCAGAAATCAGGACCTTGCTCAAGAAATAATAAAGCTAGATACTTCATCAAGTGACCTTGAAATGTGTAAGCTGACCTTAGCAACAATCAAAGAGGAAAAGAAAGATTTAGAGTCGTCTTTACAGGAAAAAACAGAAGAATCTACTAAGATTTCATCTGAGCTTGATTTTTTGAAGAAGAACTTGGATTCTCTACATAATGAGTTGCATGCTGAGAAAACTGTAAGAGAAAAATTAGAGAAAACAGTTTCCGATCTTACCACAGAATTGAATGAGAAGCAACGTCAGCTGCAGGGAAAGAAAGATTTGGAGTCATCTTTACATGAAAGAGCAGAAGAAGCTGCTAAGATTTCATCTGAGGTTGATTTTTTGAAGAAGAACTTGCATTCTCTGCATTCTGAGTTGCATGCTGAGAAAACTGTCAGAGAAAAGTTGGAGAAAACAATTTCCGATCTTACCACAGAATTGAACGAGAAGCAAACCCAGCTGCAGGGAAAGAAAGATTTGGAATCATCTTTACAGGAAAGAGCTGAAGAATCCGCCAAGATTTCATCTGAGCTTAATTTTTTGGAGAAGAACTTGTATTCTCTGCATACTGAGTTGCATGCTGAGAAAATTGTCAGAGAAAAGTTGGAGAAAACAGTTTCAGATCTTACCACAGAATTGAATGAGAAGCAATGCCAGCTTCAGGATTCTGATCTGAAAAGACAAGAACTTGTCCATCTCAAGCAAATGGTGACAGACTTAGAATTTGAAAATTCAAGAATATCAGATTTGCTACAGAAATCTGAGAAACATCTTACAGATGCTTTAAAAGAATCTTCTTCTATTAGTTGTCTGGAAACTCAGTTATCTGAAATGCATGAATTTTGCATAGCTACAGATGTTGTCATGACTTTCACCAGAGCTCAGTTTGAGGATCATATGGAGGAGCTTGCTCAGAAGCTTCATTCCACTTGCTGGCAACTTGATGTGGTCCACAAGAAGAATCTTGATGTAGAATCTGAATTGGATGGCTATCTTTCAAGAGAACGGACTTGCATTGAAGAAAATACAAGATTGTTGACGAGTCTTGACTTTGTGAAATCTGAGATAGATGTCTTGACCACTCAGAATAGAGCACTAATTGATCAAAACAGTGCAAATATGTTGGAGCTTAAGGAGCATAAGAGTAGGACAGAGAAGATCAGTGATACTTATGTGCGTGAAAGACAGAGTGTCCCTGAGGTTGCAAGGCTGGAGCAATTGCTGGCAAGTTGTTGCAGAAATGCTGAAGAACTCTTTTTGTCCAAGGAAGCAGCAGAATTCAAGTGTATAGTTCTCCTGGGCAAATTGGATGAACTGGAAACTGCATTCACTTCATTAAAACAATCTGATAATGAGCTGATAAGGCTGCAGAACCAATGCAATGAACTTACCAAGAGGCTTGCTGAACAAGTTTTGAAAACAGAGGAGTTTAAGAATTTGTCTATTCATTTGAAGGAACTGAAAGACAAAGCAGAGGCTGAGTGTGCTAATGCTCATGACAGAAGAGGACCTGAAGGACCACCGGTTGCTATGCAGGAGTCCTTGAGAATTGCATTTATCAAGGAGCAATATGAATCAAAGTTGCAAGAACTAAGACAACAGCTGTCTTTGTCAAAAAAGCATAGTGAGGAAATGCTGTGGAAACTACAAGATGCAGTTGATGAAACTGAGAAAAGAAAAAAGTCTGAAGCTTCTCAAATAAAAATTAATGAAGAGTTGGGGATGAAGATCTTGGAATTGGAGGCTGAGTTACAGGCTGTACTTTCTGATAAACGCAATTTGTTAAATGCTTATGACCTGCTAAAGGCTGAAAAGGAGTGTTCAGTGATAAGCCTTGAATGTTGTAAACAAGAAAAGCAAGAGCTTGAAGCTTCTCTTGTAAAATGCAATGAGGAGAAGTCCAAAATCGAAGTAGAGCTTACCTTGGCGAAGGAATTGGTTGAGACTTCGGGATCTCATGTGAATTCTCTGAATGAGGGCAATGGTACATTCTCTTCATTGAATCCTCAAGAAAATTCTACTCATGCTGCTTGCAGTCATGAGCCAGAGAGTGCAAGCATCAATATGCAATCCAAGGATCCTCTTGCATTTAGTGTTATGAATGGATGCCAAACTCTTGGAACTGAAAAGGACTTGCAACTAGAAGAAGTAATGAAGCATGTGGCATCAACTCAAAGTTTGAAATCTAGCATTGATCACTTGAATAAGGAGTTGGAAAGGATGAAAAACGAGAATATGCTTCCTTCAGTAGACGGTCAAAGCCACGAGTCAAGTTTTCCAGGTCTACAAAGAGAACTGATGCAATTACACGAGGCCAATCAAGAGTTAGGAAACATATTCCCTGTTTTCGATAAATTCTCTATCAGCGGTAATGCATTAGAAAGGGTGCTCGCTTTGGAGATTGAGCTTGCTGAAGTGCTGCGGACGAAGAGGTCGTCAAACATCCAATTTCAGAGTTCTTTCTTGAAACAGCACAGTGATGAAGAAGCAGTATTCAGAAGTTTTAGGGACATCAATGAGCTAATTAAAGACATGTTAGAACTAAAGGCAAGACATTCTGCTGTGGAGACAGAACTGAAAGAGATGCATGACCGTTACTCTCAGTTAAGTCTTCAATTTGCAGAGGTTGAAGGTGAGAGGCAAAAACTCATGATGACTATTAAGAATACAAGAGCATCCAAGAAGGCTTCAAATTAA

Predicted protein sequences of Glyma04g12100

Limit To All Plant Sequences

>Glyma04g12100.2   sequence type=predicted peptide   gene model=Glyma04g12100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRVTKWKIEKTKVKVVFRLQFHATHIPQSGWDKLFISFIPADSGKATSKTTKANVRNGTCKWADPIYETTRLLQDIKTRQYEEKFYKFVVAMGSSRSSILGEANINLADFVDALKPTAVALPLNGSEPGVALHVTVQLLTSKTGFREFEQQRELRERGLQTTSDQGTHDESADSKESSPDQNANNHMNKVHSRVKLKRESKDLPRISSLEGESGVNEDYADSAAGFDGSSSTSESIYTEKHDISSTHEVDSLKSTISGDLGGLSLSQSPQPEKGEAPDNQFPAQGSERVHDWSIDYSAANSLAAASEDRSSNRLMGNLDAVESSILDLKLKVSSLQNHADEIGVETHKFSEQLAAEISSGEELVKEVAVLKSECSKFRDEFEQLKSSKLSLALPHKEPTGTDRDKLFQNLQHKWHKGLLLMEGKIRDIQKVSLGFPERDFRFLNLELEALAEILQNLKQESGEPISGAKVVNERENKKMDMHKSEQFLTDIGSDTGLFQPESMTHYLTIPGLVSHEFDSVDPALAMKEKVFELLRELDESKTERESLVRKMDQMECYYEALIQELEQNQRQMMAELQNLRNEHSTCMYTISAGKSEMEKMHQNMNEQIMKFAEDKHILESLNSDFERRAISAEAALKRARLNYSIAVGQLQKDLELLSCQVLSMHETNENLIKQTLSDSSLPNADGSPEPVTYPKISEGRTFNRSLCQNHSSSLQRQHLGEDILLSDLKRSLQLQEGLYRQVEEEISQMHFVNIYSDVFSKALQETLLEASLDIQLMKEKIVQLSQQLELTNESNELLVLRLQNAMNDILSLNEYKEICTAKSNDIALQNQILEANLKDLAHENNLLTEKINELEVLLTEYRSYEGKYMACSTENSELRSLLKKESLGKKHLHDEISILQEELKSIRTKFDEQVSMKDNLQNNAIFLSKKLQKLLASYEERHSELSLCSRSACLDSECEDVEGLLLQLEELQQSAFHRILLLIEEKEILVHEKLMAQVSLNTAESDVLVMKQKVEHDLQEMVQKITVSGALLQKLQLNFEVIINRINAGFEAEELYSQHHKEFLSGLDHLEAELQQLNSRNQDLAQEIIKLDTSSSDLEMCKLTLATIKEEKKDLESSLQEKTEESTKISSELDFLKKNLDSLHNELHAEKTVREKLEKTVSDLTTELNEKQRQLQGKKDLESSLHERAEEAAKISSEVDFLKKNLHSLHSELHAEKTVREKLEKTISDLTTELNEKQTQLQGKKDLESSLQERAEESAKISSELNFLEKNLYSLHTELHAEKIVREKLEKTVSDLTTELNEKQCQLQDSDLKRQELVHLKQMVTDLEFENSRISDLLQKSEKHLTDALKESSSISCLETQLSEMHEFCIATDVVMTFTRAQFEDHMEELAQKLHSTCWQLDVVHKKNLDVESELDGYLSRERTCIEENTRLLTSLDFVKSEIDVLTTQNRALIDQNSANMLELKEHKSRTEKISDTYVRERQSVPEVARLEQLLASCCRNAEELFLSKEAAEFKCIVLLGKLDELETAFTSLKQSDNELIRLQNQCNELTKRLAEQVLKTEEFKNLSIHLKELKDKAEAECANAHDRRGPEGPPVAMQESLRIAFIKEQYESKLQELRQQLSLSKKHSEEMLWKLQDAVDETEKRKKSEASQIKINEELGMKILELEAELQAVLSDKRNLLNAYDLLKAEKECSVISLECCKQEKQELEASLVKCNEEKSKIEVELTLAKELVETSGSHVNSLNEGNGTFSSLNPQENSTHAACSHEPESASINMQSKDPLAFSVMNGCQTLGTEKDLQLEEVMKHVASTQSLKSSIDHLNKELERMKNENMLPSVDGQSHESSFPGLQRELMQLHEANQELGNIFPVFDKFSISGNALERVLALEIELAEVLRTKRSSNIQFQSSFLKQHSDEEAVFRSFRDINELIKDMLELKARHSAVETELKEMHDRYSQLSLQFAEVEGERQKLMMTIKNTRASKKASN*

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