Glyma04g11730 - SoyBase

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Report for Sequence Feature Glyma04g11730

Feature Type:	gene_model
Chromosome:	Gm04
Start:	10355745
stop:	10357591
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04910	AT	Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein \| chr4:2489696-2495666 REVERSE LENGTH=742	SoyBase	E_val: 4.00E-14	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
UniRef100_C7FDI5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TNP2 n=1 Tax=Glycine max RepID=C7FDI5_SOYBN	SoyBase	E_val: 5.00E-84	ISS
UniRef100_UPI0002336CD5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336CD5 related cluster n=1 Tax=unknown RepID=UPI0002336CD5	SoyBase	E_val: 1.00E-93	ISS

Expression Patterns of Glyma04g11730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g11730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g11730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g11730

Limit To All Plant Sequences

>Glyma04g11730.1   sequence type=CDS   gene model=Glyma04g11730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCCATGAAATGTATGATCGGGTCAAAGACATCATAATTGTTTTTGGTAAGACACAAAGGAAAGATCATGCTGACAAGAACATTAGGAAGAAAATGTCAATGTTCTTTGATCTTCCTTATTGGACCAATCTAAATGTTCGACATTGTCTCAACGTAATGCATGTGGAGAAGAATGTTTGTGATAGTTTAATTGGCACTCTTCTTAACATCAAAGGCAAGACAAAGGATGCACTAGGTCGGCAAACTTATTTGCCCCCTGCATGTTACACAATGTCAACTAAGGAGAAAAAACATTTTTGTCATTGTCTTAAAAATGTAAAAGTCCCACAAGGATACTCTTCCAATATCAAGAGCCTTGTGTCAGTTAATGATTTGAAGTTGCTGTTGCCTGTGGTGGTTCGTGGTGTATTGCCTGAGAAACTTAGGGTTGCGATAACCCGCTTGTGTTTTTTCTTTAATGATATCTATAGCAAGGTTATTGATCCAAAAAAACTGGATGATTTGGAGAATCAGGCAGCCATTATCCTATGTGAATTAGAGATAGTTCATCTCCACATGGTCAATATCACCAATGAAAAGTTTGAAATGTTAGGGAAAAAACTCATGGTTATTGGCACAACAAGTGAACTAGATTTCTTGGAATCAATTGGATTTTGTGATACCTTCTCTGTTACTTACCATATTCCTACATTGAACACAAAGGATGCAAAGAAGTTCAAAATAAATGTTAAGCTTTTCCTTTTCTTTTTTAAAATCACAAATATTGATTCCACTACAGAGGCATTGAATGATGTATATGCCTATCAGGAAGCTATACATCCTCTTATAAATGAATTTCTTCACGAGCAGTTGCTAGCAGAGAATGAGGTTCTTGTAAATGAATTTCTTCATGACCATTGTTCGCATCCT

Predicted protein sequences of Glyma04g11730

Limit To All Plant Sequences

>Glyma04g11730.1   sequence type=predicted peptide   gene model=Glyma04g11730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GHEMYDRVKDIIIVFGKTQRKDHADKNIRKKMSMFFDLPYWTNLNVRHCLNVMHVEKNVCDSLIGTLLNIKGKTKDALGRQTYLPPACYTMSTKEKKHFCHCLKNVKVPQGYSSNIKSLVSVNDLKLLLPVVVRGVLPEKLRVAITRLCFFFNDIYSKVIDPKKLDDLENQAAIILCELEIVHLHMVNITNEKFEMLGKKLMVIGTTSELDFLESIGFCDTFSVTYHIPTLNTKDAKKFKINVKLFLFFFKITNIDSTTEALNDVYAYQEAIHPLINEFLHEQLLAENEVLVNEFLHDHCSHP

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