Glyma04g11616 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g11616

Feature Type:	gene_model
Chromosome:	Gm04
Start:	10108731
stop:	10109439
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11616

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_UPI000233A23C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A23C related cluster n=1 Tax=unknown RepID=UPI000233A23C	SoyBase	E_val: 4.00E-51	ISS

Expression Patterns of Glyma04g11616

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g11616 not represented in the dataset	Glyma04g11616 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g11616 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g105400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11616

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g11616

Limit To All Plant Sequences

>Glyma04g11616.1   sequence type=CDS   gene model=Glyma04g11616   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATGACTAAGCCTCACGTGCTTATGCTGCTGATCATCATGGTTGTCTCAATTGCAGAGAAACCATCAGTTATAGAAGGAAGGGCACTTTCCTTAATATCTGGTCAAGGGTACTCAAAGATTTTTGCAACGCTTGGAGTTGTATGCAAGTGTTGTGATGGGGTTGGAGGCGCCTGCACTAGTAAATGGACAGAATCTTGCAATAACCTACAATGTTTTCCTTGGAAATCACATTGTACTAAGCAACATCAAATATTTTATGCTAATTAA

Predicted protein sequences of Glyma04g11616

Limit To All Plant Sequences

>Glyma04g11616.1   sequence type=predicted peptide   gene model=Glyma04g11616   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMTKPHVLMLLIIMVVSIAEKPSVIEGRALSLISGQGYSKIFATLGVVCKCCDGVGGACTSKWTESCNNLQCFPWKSHCTKQHQIFYAN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain