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Report for Sequence Feature Glyma04g11582

Feature Type:gene_model
Chromosome:Gm04
Start:10028977
stop:10034903
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g11582
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G22150AT Annotation by Michelle Graham. TAIR10: sulfate transporter 1;3 | chr1:7818361-7821344 FORWARD LENGTH=656 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0008272GO-bp Annotation by Michelle Graham. GO Biological Process: sulfate transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0008271GO-mf Annotation by Michelle Graham. GO Molecular Function: secondary active sulfate transmembrane transporter activity SoyBaseN/AISS
GO:0015116GO-mf Annotation by Michelle Graham. GO Molecular Function: sulfate transmembrane transporter activity SoyBaseN/AISS
PTHR11814Panther SULFATE TRANSPORTER JGI ISS
PTHR11814:SF46Panther SUBFAMILY NOT NAMED JGI ISS
PF00916PFAM Sulfate transporter family JGI ISS
PF01740PFAM STAS domain JGI ISS
UniRef100_G7KA24UniRef Annotation by Michelle Graham. Most informative UniRef hit: Sulfate transporter n=1 Tax=Medicago truncatula RepID=G7KA24_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JVH8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JVH8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g11582
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g11582 not represented in the dataset
Glyma04g11582 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11582
ParalogEvidenceComments
Glyma06g11140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11582 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g105200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g11582
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g11582
>Glyma04g11582.1   sequence type=CDS   gene model=Glyma04g11582   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGTGCTGCTATTACAATTGCCCTTCAACAGCTTAAGGGTTTCCTTGGCATTAAAACTAAACAGTTCACAACGAACACTGATATTGTCCATGTGATGCATTCAGTATTCAATACAGCTCATCATGGATGGAACTGGCAAACTATAGTCATGGGAGCTAGCTTTTTGGGTTTTCTTCTGGTTGCCAAATATATTGGAAAGAAAAACACGAAATTCTTCTGGGTACCAGCAATTGCTCCATTGATATCCGTTATTTTGTCCACTTTTATTGTATTCATAACCCGTGCAGATAAGCAAGGAGTAGAAATTGTAAGAAAAATAAAAAGAGGCATCAATCCATCATCTGTTAAAGATATTTATTTTACCGGAGAATACCTTGGAAAAGGTTTTAAAATTGGCATCGTGGCCGGCATGATAGCATTGACTGAAGCCACAGCAATTGGAAGAACATTTGCATCTATGAAAGACTATCAATTGGATGGGAACAGAGAAATGATGGCATTAGGAACAATGAATGTTGTTGGTTCCATGACTTCGTGTTATGTAGCAACAGGTTCTTTCTCTCGGTCTGCGGTAAATTACATGGCAGGCTGCCAAACTGCAGTCTCTAATATTGTGATGTCAGTGGTTGTGTTCTTAACCCTGAAATTCATCACTCCTCTTTTCTACTACACTCCAAATGCCATTCTTTCTGCAATCATCATTTCTGCTGTCATCAGTCTTGTAGACTATGAGGCAGCAATTTTGATCTGGAAGATAGATAAATTTGATTTTGTTGCTTGCATGGGTGCATTCTTTGGGGTTGCTTTTGTCTCGGTTGAGAAAGGACTTCTAATTGCTGTCTCTATTTCCTATGCCAAGATCCTATTACAAGTCACAAGGCCCCGAACTGCAATTCTGGGGAAGATTCCTAGGACTACTGTGTATAGAAACATTCAACAATATCCAGAAGCTAGTAAGATTCCAGGTGTACTGATTGTAAGAGTCGATTCTGCAATATATTTTTCCAACTCCAATTATGTAAAAGAAAGGATATTAAGATGGCTGATGGATGAAGAAAAAGGAGACTACCGCACAAAAATCCAGTTTTTGATAGTTGAAATGTCACCCGTTACGGACATAGACACAAGTGGCATCCAAGCCTTTGAAGAGTTACACAGAAGTCTTGAGAAGAAGGGTGTTGAGCTTGTTTTGGCAAATCCTGGGCCAGCAGTGACAGACAAGCTTTACGCATCCAGTTTTGCAAACACGATTGGCGAGGACAAGATCTTCCTCACTGTTGCACAGGCTGTTGCATATTGTTCTCCAAAGGTGGTTGAGGACCCATGA
Predicted protein sequences of Glyma04g11582
>Glyma04g11582.1   sequence type=predicted peptide   gene model=Glyma04g11582   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGAAITIALQQLKGFLGIKTKQFTTNTDIVHVMHSVFNTAHHGWNWQTIVMGASFLGFLLVAKYIGKKNTKFFWVPAIAPLISVILSTFIVFITRADKQGVEIVRKIKRGINPSSVKDIYFTGEYLGKGFKIGIVAGMIALTEATAIGRTFASMKDYQLDGNREMMALGTMNVVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSVVVFLTLKFITPLFYYTPNAILSAIIISAVISLVDYEAAILIWKIDKFDFVACMGAFFGVAFVSVEKGLLIAVSISYAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEASKIPGVLIVRVDSAIYFSNSNYVKERILRWLMDEEKGDYRTKIQFLIVEMSPVTDIDTSGIQAFEELHRSLEKKGVELVLANPGPAVTDKLYASSFANTIGEDKIFLTVAQAVAYCSPKVVEDP*






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