Glyma04g11560 - SoyBase

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Report for Sequence Feature Glyma04g11560

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9999162
stop:	10003087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78010	AT	Annotation by Michelle Graham. TAIR10: tRNA modification GTPase, putative \| chr1:29333535-29336297 FORWARD LENGTH=560	SoyBase	E_val: 0	ISS
GO:0006184	GO-bp	Annotation by Michelle Graham. GO Biological Process: GTP catabolic process	SoyBase	N/A	ISS
GO:0006400	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA modification	SoyBase	N/A	ISS
GO:0006897	GO-bp	Annotation by Michelle Graham. GO Biological Process: endocytosis	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG1191	KOG	Mitochondrial GTPase	JGI		ISS
PTHR11649	Panther	MSS1/TRME-RELATED GTP-BINDING PROTEIN	JGI		ISS
PTHR11649:SF28	Panther	THIOPHENE AND FURAN OXIDATION PROTEIN THDF	JGI		ISS
PF01926	PFAM	GTPase of unknown function	JGI		ISS
PF10396	PFAM	GTP-binding protein TrmE N-terminus	JGI		ISS
UniRef100_G8A389	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: tRNA modification GTPase mnmE n=1 Tax=Medicago truncatula RepID=G8A389_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JVH7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVH7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g11560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11560

Paralog	Evidence	Comments
Glyma06g11131	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g105000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g11560

Limit To All Plant Sequences

>Glyma04g11560.2   sequence type=transcript   gene model=Glyma04g11560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGATAAGAATGGGCCTGAGGTCCAGTGGAAAAATAAGATTGATGATAGATAGACATACATAGAGTAGCATCAACCAGACAGAAACCGAAACTAGAACGGAAAATGGCTGCTTTCCGCGGCGTGCTTCGTCACATACACATAAGCACGTTCAGCTGCTTCACTCCACCGCCGCGCATACCTACTATGGCGTTGTTTTCAAGTCAGGGTGCCATGTGGCACTGTCTTATTCCCTCCAAAGCCTCCAGAACAGTAAAATCCCGCGCCGGTTCAGAGAACTACAATAACTTAGTGTTGAAGAAAGACGAGCGCTTAGGTGCTGGAGAGTGTGTCGGCGAGGTTGGAAGTGGGACCACGATTGCGGCCATCGTAACTTCCGTGGGGGGCCCACCTGCTGCCGTTGGAATCGTTCGACTTTCTGGCCCGGGCGCGGTGTCCATTGCGGGCCGAGTGTTTCGGCCCGCCCGGAAGACGTGGCGGCCCACTAGCCACGTTGTCGAATACGGCGTCGTCTTGGACTCCGACGGCAACGTCATCGATGAGGTTTTGGCGGTTCCGATGCTGGCACCGAGGTCCTACACGCGCGAAGACGTGGTCGAGCTTCAGTGCCACGGGAGCGAAGTGTGTCTGCGCCGCGTGCTTAGGACTTGTTTGGAAGCCGGAGCAACACTCGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGTTTGGATCTCTCCCAAGCCGAAAACGTTGCAAGATTAATTGCCGCGAAATCCGTGGCTGCTGCAGATGCTGCACTGGAAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGGAGTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCGCCCCTGGATTTGAATCTGATTATGGATAAAATCCATAACATGTCACGAGAGGTGGAGAATGCGTTGGAAACGGCAAATTATGACAAGCTTCTGCAATCTGGATTGCAGATAGCAATTGTTGGGCGCCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGTGTTAGTGGCATTCCTATAACACTTCTTGATACCGCCGGCATCAGGGACACTGATGACATTGTGGAAAAGATTGGCGTAGAGCGATCTGAAGCAGTTGCTAGGGGTGCTGATTTAATTATCATGACTATGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTACTAAGGTGGACAGAGGTGGTACCAATTACACGGATTTTAAAACCAAGTCTCCAGAAAGGGATCAACTGGATCATCCACCCCAGTCATCCTTGTGGTAAACAAGATAGACTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGATGTCAGAATCATATTTTCAGTAAACATGTGTTTACATGTGCTGTTACTGGTCAAGGATTGCATGACTTAGAGGGGGCAGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGGTGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGTAAGGTTACAATCATCCATAAAGGACGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAGAAGGGGTCCAAATATGTGCTTGGTGATTTTTAGCTAGTTTTCTTTACACCATTTCATCAATCATGTATAGGACGCCAAATTCAATGAGTCAGTATATCTCCCTTGGATTTAAAAGCCATTGTGATCAGTTGTTGTATATTTCTCATACTTATTATCACATGAATTGTTAAATTAATTTTGAGAGTACAACTGCAAATAAAGTGATATTCAGTAGGCTAATCCACCGAAGCAAGTTTTTAATTCGTCTAATAGAATTTGGGACATCATTGCTT

Coding sequences of Glyma04g11560

Limit To All Plant Sequences

>Glyma04g11560.1   sequence type=CDS   gene model=Glyma04g11560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTTCCGCGGCGTGCTTCGTCACATACACATAAGCACGTTCAGCTGCTTCACTCCACCGCCGCGCATACCTACTATGGCGTTGTTTTCAAGTCAGGGTGCCATGTGGCACTGTCTTATTCCCTCCAAAGCCTCCAGAACAGTAAAATCCCGCGCCGGTTCAGAGAACTACAATAACTTAGTGTTGAAGAAAGACGAGCGCTTAGGTGCTGGAGAGTGTGTCGGCGAGGTTGGAAGTGGGACCACGATTGCGGCCATCGTAACTTCCGTGGGGGGCCCACCTGCTGCCGTTGGAATCGTTCGACTTTCTGGCCCGGGCGCGGTGTCCATTGCGGGCCGAGTGTTTCGGCCCGCCCGGAAGACGTGGCGGCCCACTAGCCACGTTGTCGAATACGGCGTCGTCTTGGACTCCGACGGCAACGTCATCGATGAGGTTTTGGCGGTTCCGATGCTGGCACCGAGGTCCTACACGCGCGAAGACGTGGTCGAGCTTCAGTGCCACGGGAGCGAAGTGTGTCTGCGCCGCGTGCTTAGGACTTGTTTGGAAGCCGGAGCAACACTCGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGTTTGGATCTCTCCCAAGCCGAAAACGTTGCAAGATTAATTGCCGCGAAATCCGTGGCTGCTGCAGATGCTGCACTGGAAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGGAGTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCGCCCCTGGATTTGAATCTGATTATGGATAAAATCCATAACATGTCACGAGAGGTGGAGAATGCGTTGGAAACGGCAAATTATGACAAGCTTCTGCAATCTGGATTGCAGATAGCAATTGTTGGGCGCCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGTGTTAGTGGCATTCCTATAACACTTCTTGATACCGCCGGCATCAGGGACACTGATGACATTGTGGAAAAGATTGGCGTAGAGCGATCTGAAGCAGTTGCTAGGGGTGCTGATTTAATTATCATGACTATGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTACTAAGGGATCAACTGGATCATCCACCCCAGTCATCCTTGTGGTAAACAAGATAGACTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGATGTCAGAATCATATTTTCAGTAAACATGTGTTTACATGTGCTGTTACTGGTCAAGGATTGCATGACTTAGAGGGGGCAGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGGTGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGTAAGGTTACAATCATCCATAAAGGACGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAG

>Glyma04g11560.2   sequence type=CDS   gene model=Glyma04g11560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTTCCGCGGCGTGCTTCGTCACATACACATAAGCACGTTCAGCTGCTTCACTCCACCGCCGCGCATACCTACTATGGCGTTGTTTTCAAGTCAGGGTGCCATGTGGCACTGTCTTATTCCCTCCAAAGCCTCCAGAACAGTAAAATCCCGCGCCGGTTCAGAGAACTACAATAACTTAGTGTTGAAGAAAGACGAGCGCTTAGGTGCTGGAGAGTGTGTCGGCGAGGTTGGAAGTGGGACCACGATTGCGGCCATCGTAACTTCCGTGGGGGGCCCACCTGCTGCCGTTGGAATCGTTCGACTTTCTGGCCCGGGCGCGGTGTCCATTGCGGGCCGAGTGTTTCGGCCCGCCCGGAAGACGTGGCGGCCCACTAGCCACGTTGTCGAATACGGCGTCGTCTTGGACTCCGACGGCAACGTCATCGATGAGGTTTTGGCGGTTCCGATGCTGGCACCGAGGTCCTACACGCGCGAAGACGTGGTCGAGCTTCAGTGCCACGGGAGCGAAGTGTGTCTGCGCCGCGTGCTTAGGACTTGTTTGGAAGCCGGAGCAACACTCGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGTTTGGATCTCTCCCAAGCCGAAAACGTTGCAAGATTAATTGCCGCGAAATCCGTGGCTGCTGCAGATGCTGCACTGGAAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGGAGTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCGCCCCTGGATTTGAATCTGATTATGGATAAAATCCATAACATGTCACGAGAGGTGGAGAATGCGTTGGAAACGGCAAATTATGACAAGCTTCTGCAATCTGGATTGCAGATAGCAATTGTTGGGCGCCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGTGTTAGTGGCATTCCTATAACACTTCTTGATACCGCCGGCATCAGGGACACTGATGACATTGTGGAAAAGATTGGCGTAGAGCGATCTGAAGCAGTTGCTAGGGGTGCTGATTTAATTATCATGACTATGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTACTAAGGTGGACAGAGGTGGTACCAATTACACGGATTTTAAAACCAAGTCTCCAGAAAGGGATCAACTGGATCATCCACCCCAGTCATCCTTGTGGTAA

Predicted protein sequences of Glyma04g11560

Limit To All Plant Sequences

>Glyma04g11560.1   sequence type=predicted peptide   gene model=Glyma04g11560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAFRGVLRHIHISTFSCFTPPPRIPTMALFSSQGAMWHCLIPSKASRTVKSRAGSENYNNLVLKKDERLGAGECVGEVGSGTTIAAIVTSVGGPPAAVGIVRLSGPGAVSIAGRVFRPARKTWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTMSAVEGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCKPCAETEWDKGCQNHIFSKHVFTCAVTGQGLHDLEGAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALVRLQSSIKDELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK*

>Glyma04g11560.2   sequence type=predicted peptide   gene model=Glyma04g11560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAFRGVLRHIHISTFSCFTPPPRIPTMALFSSQGAMWHCLIPSKASRTVKSRAGSENYNNLVLKKDERLGAGECVGEVGSGTTIAAIVTSVGGPPAAVGIVRLSGPGAVSIAGRVFRPARKTWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTMSAVEGWTSEDTKLLERIQSTKVDRGGTNYTDFKTKSPERDQLDHPPQSSLW*

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