Glyma04g11380 - SoyBase

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Report for Sequence Feature Glyma04g11380

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9816054
stop:	9820112
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22170	AT	Annotation by Michelle Graham. TAIR10: Phosphoglycerate mutase family protein \| chr1:7826603-7828055 FORWARD LENGTH=334	SoyBase	E_val: 8.00E-174	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016868	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity, phosphotransferases	SoyBase	N/A	ISS
KOG0235	KOG	Phosphoglycerate mutase	JGI		ISS
PTHR11931	Panther	PHOSPHOGLYCERATE MUTASE	JGI		ISS
PF00300	PFAM	Phosphoglycerate mutase family	JGI		ISS
UniRef100_G8A375	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Medicago truncatula RepID=G8A375_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JVH1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVH1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g11380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11380

Paralog	Evidence	Comments
Glyma06g11070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g104500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g11380

Limit To All Plant Sequences

>Glyma04g11380.4   sequence type=transcript   gene model=Glyma04g11380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAGAATTTAGTTTGGAAGGTTTTATGCGCATGGCATTAGCGGGATGTGGCACAGTCTAGTTTTTGTCCAACAACCTAACAAACAAACCTACCACCATTTTTTCTTCTATTTCTATGCTTTGTCAATTTGTCGTGCCACTTGATACTCTTGACAATTACAACTACCTTCGCTTCTGTATTTACATTTTCTCCTTAAACTCATTCTTCGCACTCTTGCATTGCCTCCACCTCCTTTTCTCCATTTATAGTGTAATGTTCTCTTCCACATTTTCATTTCGCTCTTCTCTTTGACTACTTGCATCTGGGATAATGGCTGCTGAAGTATATTACCAGGCTATTGGTACTTTGCAGTCCCATTCTTATCTGAATAATTTAAATCATCACCAAAAGCATCAAAACAATTTAGTAACATTGGTGTCTAGGGATTTTATCAGCAGTAATGGCTTGTCAACGAGAAGAAGTAACTGCACTGGCCAGAGGAATTGTAGTGTAATTCGATCTCTAGCTTCGCAAACATCAGTCGTTGATCCAGTGTTGTCCCCTTCAAGAAGCAATGCTGGTGACACTTACAAGAAATCAAATGAAGCAGCTTTAATCCTTATTCGGCATGGTGAGTCGTTATGGAATGAGAAGAACTTATTCACAGGGTGTGTTGATGTCCCTCTAAGCAAGAAGGGTATAGATGAGGCAATTGAAGCTGGAAAAAGAATTAGCAGCATTCCTGTTGATGTAATATTTACATCAGCTTTGATTCGTGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGTCGTGGGAAGGTCCCTATCATGATGCACAATGAGAGTGAACAAGCAAGGTCATGGAGTCAAGTGTTTAGTGAAGATACAAAAAAGCAGTCCATTCCAGTCATAGCATCTTGGCAACTAAATGAAAGAATGTATGGGGAGCTGCAGGGTCTCAATAAGCAAGAAACAGCAGACAGATATGGGAAAGAACAAGTCCATGAGTGGCGACGAAGTTATGACATACCTCCTCCAAATGGTGAAAGTTTGGAAATGTGTGCTGAAAGAGCAGTTGCCTATTTCAGAGACCAAATTGAACCTCAACTTTTATCTGGAAAGAATGTTATGATTTCAGCCCATGGGAATTCATTGAGATCCATTATCATGTACCTTGATAAATTAACTTCCCAAGAGGTCATTAGTTTGGAACTGTCAACTGGAATTCCCATGCTTTACATTTTCAAAGAGGGAAGATTCATTAGGAGGGGGAGTCCCATAGGACCTTCTGAAGCTGGAGTTTATGCCTATACTAGGCGTTTGGCTCTTTACAAGCAGAAGTTGGACAACATGTTCCAATGATATGTTATTTAGGATATACATTCACATTTAATAAGAAATGTTACAGTTAAATCACAAAGGTGGAAGATGTTTTCAGTGACACTGTGTTAGGTACATAGAATATGTGCACTTGTCCTAAAGCTAGGTTGTTTTCTATGTGCGAGTACAGTGTTGAATCAGTATATCTAGAGATGAATTCCCATTTTTTATGTATATTTATCTTATCCGGTGAGCGAGCGACTATTTCCAAGAACCTGTTGATGCATCTTATAAATGTGGAAACACTGTAGCACTTGCAGTTCAGGTCCATTATTATAATTGTAAATCAGTTCTATTGTGGATTTTTCTGGATATTCTGAAAGTTTTATTATAGAAATTCCCTACAGTCCTACTTATCCTTGACTGGATATTCTGAAAGTTTTATTACGGAAATTCCCTACAATCCTACTTATCCTTGACTACTCTTGTACATCTCATTTTCTCCCTCCTTTCAGACACAATGACG

>Glyma04g11380.5   sequence type=transcript   gene model=Glyma04g11380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAGAATTTAGTTTGGAAGGTTTTATGCGCATGGCATTAGCGGGATGTGGCACAGTCTAGTTTTTGTCCAACAACCTAACAAACAAACCTACCACCATTTTTTCTTCTATTTCTATGCTTTGTCAATTTGTCGTGCCACTTGATACTCTTGACAATTACAACTACCTTCGCTTCTGTATTTACATTTTCTCCTTAAACTCATTCTTCGCACTCTTGCATTGCCTCCACCTCCTTTTCTCCATTTATAGTGTAATGTTCTCTTCCACATTTTCATTTCGCTCTTCTCTTTGACTACTTGCATCTGGGGTACGCTGATTCCATTTGTTTTCGTGATTTTTGACTTAATACTTGTTGCAAATAAAATAAAAAAGTAACTTTCTCATTTTTTTTTTATTTACGCATCAAACTTCTATGTGGGATTTCTCTTGTTTCGTTGCTATATTCCTTTTATAGATCTGCTATCTCTTTATTTCTAATTTCCCTATGCCTATGATGATTTAGATAGTGATGTAAGGTAGATTGTTTTTTTTTTTTTTCCCCTGGTGTTGAACATTTTTCTAAGCAAGTATGTTTTTGTTGTTTCCTTGATTCTAATATTTGAGTTTTGAGGGTACATCATGATACTAAAACAAACCTACATGTTCATCAAAATAAAAAACCTACATGTTAGCTGCATCTCTTGTGCACCACAGCAACCTAGCACTGTTGCCCTGTTCCTGAATTGTCAACTCTAAAGTTGTTTTTTCTTACTCAGCTGTTTGTTTTCAATTTTCAGATAATGGCTGCTGAAGTATATTACCAGGCTATTGGTACTTTGCAGTCCCATTCTTATCTGAATAATTTAAATCATCACCAAAAGCATCAAAACAATTTAGTAACATTGGTGTCTAGGGATTTTATCAGCAGTAATGGCTTGTCAACGAGAAGAAGTAACTGCACTGGCCAGAGGAATTGTAGTGTAATTCGATCTCTAGCTTCGCAAACATCAGTCGTTGATCCAGTGTTGTCCCCTTCAAGAAGCAATGCTGGTGACACTTACAAGAAATCAAATGAAGCAGCTTTAATCCTTATTCGGCATGGTGAGTCGTTATGGAATGAGAAGAACTTATTCACAGGGTGTGTTGATGTCCCTCTAAGCAAGAAGGGTATAGATGAGGCAATTGAAGCTGGAAAAAGAATTAGCAGCATTCCTGTTGATGTAATATTTACATCAGCTTTGATTCGTGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGTCGTGGGAAGGTCCCTATCATGATGCACAATGAGAGTGAACAAGCAAGGTCATGGAGTCAAGTGTTTAGTGAAGATACAAAAAAGCAGTCCATTCCAGTCATAGCATCTTGGCAACTAAATGAAAGAATGTATGGGGAGCTGCAGGGTCTCAATAAGCAAGAAACAGCAGACAGATATGGGAAAGAACAAGTCCATGAGTGGCGACGAAGTTATGACATACCTCCTCCAAATGGTGAAAGTTTGGAAATGTGTGCTGAAAGAGCAGTTGCCTATTTCAGAGACCAAATTGAACCTCAACTTTTATCTGGAAAGAATGTTATGATTTCAGCCCATGGGAATTCATTGAGATCCATTATCATGTACCTTGATAAATTAACTTCCCAAGAGGTCATTAGTTTGGAACTGTCAACTGGAATTCCCATGCTTTACATTTTCAAAGAGGGAAGATTCATTAGGAGGGGGAGTCCCATAGGACCTTCTGAAGCTGGAGTTTATGCCTATACTAGGCGTTTGGCTCTTTACAAGCAGAAGTTGGACAACATGTTCCAATGATATGTTATTTAGGATATACATTCACATTTAATAAGAAATGTTACAGTTAAATCACAAAGGTGGAAGATGTTTTCAGTGACACTGTGTTAGGTACATAGAATATGTGCACTTGTCCTAAAGCTAGGTTGTTTTCTATGTGCGAGTACAGTGTTGAATCAGTATATCTAGAGATGAATTCCCATTTTTTATGTATATTTATCTTATCCGGTGAGCGAGCGACTATTTCCAAGAACCTGTTGATGCATCTTATAAATGTGGAAACACTGTAGCACTTGCAGTTCAGGTCCATTATTATAATTGTAAATCAGTTCTATTGTGGATTTTTCTGGATATTCTGAAAGTTTTATTATAGAAATTCCCTACAGTCCTACTTATCCTTGACTGGATATTCTGAAAGTTTTATTACGGAAATTCCCTACAATCCTACTTATCCTTGACTACTCTTGTACATCTCATTTTCTCCCTCCTTTCAGACACAATGACG

Coding sequences of Glyma04g11380

Limit To All Plant Sequences

>Glyma04g11380.3   sequence type=CDS   gene model=Glyma04g11380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTGTCAATTTGTCGTGCCACTTGATACTCTTGACAATTACAACTACCTTCGCTTCTGTATTTACATTTTCTCCTTAAACTCATTCTTCGCACTCTTGCATTGCCTCCACCTCCTTTTCTCCATTTATAGTATAATGGCTGCTGAAGTATATTACCAGGCTATTGGTACTTTGCAGTCCCATTCTTATCTGAATAATTTAAATCATCACCAAAAGCATCAAAACAATTTAGTAACATTGGTGTCTAGGGATTTTATCAGCAGTAATGGCTTGTCAACGAGAAGAAGTAACTGCACTGGCCAGAGGAATTGTAGTGTAATTCGATCTCTAGCTTCGCAAACATCAGTCGTTGATCCAGTGTTGTCCCCTTCAAGAAGCAATGCTGGTGACACTTACAAGAAATCAAATGAAGCAGCTTTAATCCTTATTCGGCATGGTGAGTCGTTATGGAATGAGAAGAACTTATTCACAGGGTGTGTTGATGTCCCTCTAAGCAAGAAGGGTATAGATGAGGCAATTGAAGCTGGAAAAAGAATTAGCAGCATTCCTGTTGATGTAATATTTACATCAGCTTTGATTCGTGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGTCGTGGGAAGGTCCCTATCATGATGCACAATGAGAGTGAACAAGCAAGGTCATGGAGTCAAGTGTTTAGTGAAGATACAAAAAAGCAGTCCATTCCAGTCATAGCATCTTGGCAACTAAATGAAAGAATGTATGGGGAGCTGCAGGGTCTCAATAAGCAAGAAACAGCAGACAGATATGGGAAAGAACAAGTCCATGAGTGGCGACGAAGTTATGACATACCTCCTCCAAATGGTGAAAGTTTGGAAATGTGTGCTGAAAGAGCAGTTGCCTATTTCAGAGACCAAATTGAACCTCAACTTTTATCTGGAAAGAATGTTATGATTTCAGCCCATGGGAATTCATTGAGATCCATTATCATGTACCTTGATAAATTAACTTCCCAAGAGGTCATTAGTTTGGAACTGTCAACTGGAATTCCCATGCTTTACATTTTCAAAGAGGGAAGATTCATTAGGAGGGGGAGTCCCATAGGACCTTCTGAAGCTGGAGTTTATGCCTATACTAGGCGTTTGGCTCTTTACAAGCAGAAGTTGGACAACATGTTCCAATGA

>Glyma04g11380.4   sequence type=CDS   gene model=Glyma04g11380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTGAAGTATATTACCAGGCTATTGGTACTTTGCAGTCCCATTCTTATCTGAATAATTTAAATCATCACCAAAAGCATCAAAACAATTTAGTAACATTGGTGTCTAGGGATTTTATCAGCAGTAATGGCTTGTCAACGAGAAGAAGTAACTGCACTGGCCAGAGGAATTGTAGTGTAATTCGATCTCTAGCTTCGCAAACATCAGTCGTTGATCCAGTGTTGTCCCCTTCAAGAAGCAATGCTGGTGACACTTACAAGAAATCAAATGAAGCAGCTTTAATCCTTATTCGGCATGGTGAGTCGTTATGGAATGAGAAGAACTTATTCACAGGGTGTGTTGATGTCCCTCTAAGCAAGAAGGGTATAGATGAGGCAATTGAAGCTGGAAAAAGAATTAGCAGCATTCCTGTTGATGTAATATTTACATCAGCTTTGATTCGTGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGTCGTGGGAAGGTCCCTATCATGATGCACAATGAGAGTGAACAAGCAAGGTCATGGAGTCAAGTGTTTAGTGAAGATACAAAAAAGCAGTCCATTCCAGTCATAGCATCTTGGCAACTAAATGAAAGAATGTATGGGGAGCTGCAGGGTCTCAATAAGCAAGAAACAGCAGACAGATATGGGAAAGAACAAGTCCATGAGTGGCGACGAAGTTATGACATACCTCCTCCAAATGGTGAAAGTTTGGAAATGTGTGCTGAAAGAGCAGTTGCCTATTTCAGAGACCAAATTGAACCTCAACTTTTATCTGGAAAGAATGTTATGATTTCAGCCCATGGGAATTCATTGAGATCCATTATCATGTACCTTGATAAATTAACTTCCCAAGAGGTCATTAGTTTGGAACTGTCAACTGGAATTCCCATGCTTTACATTTTCAAAGAGGGAAGATTCATTAGGAGGGGGAGTCCCATAGGACCTTCTGAAGCTGGAGTTTATGCCTATACTAGGCGTTTGGCTCTTTACAAGCAGAAGTTGGACAACATGTTCCAATGA

>Glyma04g11380.5   sequence type=CDS   gene model=Glyma04g11380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTGAAGTATATTACCAGGCTATTGGTACTTTGCAGTCCCATTCTTATCTGAATAATTTAAATCATCACCAAAAGCATCAAAACAATTTAGTAACATTGGTGTCTAGGGATTTTATCAGCAGTAATGGCTTGTCAACGAGAAGAAGTAACTGCACTGGCCAGAGGAATTGTAGTGTAATTCGATCTCTAGCTTCGCAAACATCAGTCGTTGATCCAGTGTTGTCCCCTTCAAGAAGCAATGCTGGTGACACTTACAAGAAATCAAATGAAGCAGCTTTAATCCTTATTCGGCATGGTGAGTCGTTATGGAATGAGAAGAACTTATTCACAGGGTGTGTTGATGTCCCTCTAAGCAAGAAGGGTATAGATGAGGCAATTGAAGCTGGAAAAAGAATTAGCAGCATTCCTGTTGATGTAATATTTACATCAGCTTTGATTCGTGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGTCGTGGGAAGGTCCCTATCATGATGCACAATGAGAGTGAACAAGCAAGGTCATGGAGTCAAGTGTTTAGTGAAGATACAAAAAAGCAGTCCATTCCAGTCATAGCATCTTGGCAACTAAATGAAAGAATGTATGGGGAGCTGCAGGGTCTCAATAAGCAAGAAACAGCAGACAGATATGGGAAAGAACAAGTCCATGAGTGGCGACGAAGTTATGACATACCTCCTCCAAATGGTGAAAGTTTGGAAATGTGTGCTGAAAGAGCAGTTGCCTATTTCAGAGACCAAATTGAACCTCAACTTTTATCTGGAAAGAATGTTATGATTTCAGCCCATGGGAATTCATTGAGATCCATTATCATGTACCTTGATAAATTAACTTCCCAAGAGGTCATTAGTTTGGAACTGTCAACTGGAATTCCCATGCTTTACATTTTCAAAGAGGGAAGATTCATTAGGAGGGGGAGTCCCATAGGACCTTCTGAAGCTGGAGTTTATGCCTATACTAGGCGTTTGGCTCTTTACAAGCAGAAGTTGGACAACATGTTCCAATGA

Predicted protein sequences of Glyma04g11380

Limit To All Plant Sequences

>Glyma04g11380.3   sequence type=predicted peptide   gene model=Glyma04g11380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLCQFVVPLDTLDNYNYLRFCIYIFSLNSFFALLHCLHLLFSIYSIMAAEVYYQAIGTLQSHSYLNNLNHHQKHQNNLVTLVSRDFISSNGLSTRRSNCTGQRNCSVIRSLASQTSVVDPVLSPSRSNAGDTYKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRGKVPIMMHNESEQARSWSQVFSEDTKKQSIPVIASWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAERAVAYFRDQIEPQLLSGKNVMISAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFIRRGSPIGPSEAGVYAYTRRLALYKQKLDNMFQ*

>Glyma04g11380.4   sequence type=predicted peptide   gene model=Glyma04g11380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAEVYYQAIGTLQSHSYLNNLNHHQKHQNNLVTLVSRDFISSNGLSTRRSNCTGQRNCSVIRSLASQTSVVDPVLSPSRSNAGDTYKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRGKVPIMMHNESEQARSWSQVFSEDTKKQSIPVIASWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAERAVAYFRDQIEPQLLSGKNVMISAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFIRRGSPIGPSEAGVYAYTRRLALYKQKLDNMFQ*

>Glyma04g11380.5   sequence type=predicted peptide   gene model=Glyma04g11380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAEVYYQAIGTLQSHSYLNNLNHHQKHQNNLVTLVSRDFISSNGLSTRRSNCTGQRNCSVIRSLASQTSVVDPVLSPSRSNAGDTYKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRGKVPIMMHNESEQARSWSQVFSEDTKKQSIPVIASWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAERAVAYFRDQIEPQLLSGKNVMISAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFIRRGSPIGPSEAGVYAYTRRLALYKQKLDNMFQ*

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