Glyma04g11360 - SoyBase

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Report for Sequence Feature Glyma04g11360

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9804281
stop:	9806306
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G08690	AT	Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein \| chr4:5551521-5552713 REVERSE LENGTH=301	SoyBase	E_val: 5.00E-104	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG1470	KOG	Phosphatidylinositol transfer protein PDR16 and related proteins	JGI		ISS
PTHR10174	Panther	RETINALDEHYDE BINDING PROTEIN-RELATED	JGI		ISS
PTHR10174:SF78	Panther	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLY	JGI		ISS
PF00650	PFAM	CRAL/TRIO domain	JGI		ISS
PF03765	PFAM	CRAL/TRIO, N-terminus	JGI		ISS
UniRef100_G7KA58	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Clavesin n=1 Tax=Medicago truncatula RepID=G7KA58_MEDTR	SoyBase	E_val: 4.00E-134	ISS
UniRef100_I1JVG8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVG8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g11360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11360

Paralog	Evidence	Comments
Glyma06g11050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g104300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g11360

Limit To All Plant Sequences

>Glyma04g11360.1   sequence type=CDS   gene model=Glyma04g11360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGTGGATTTGAACAAAACTGCCTCCAACGGTCATGATAAAATGGTAATATCACAAGAACATCAGGCAAAGATCACTAAGGTTAGAGGGTTGATAGGGCCACTATCAGATAAGGAATCTGTGTACTGTTCTGATGCTTCCATCTCAAGGTATTTAAGGTCCCGAAATTGGAATGTCAAGAAGGCAGCTCAAATGTTGAAACAGAGCCTAAAATGGAGAAAAGAATACAAACCTGAAGAGATTCGCTGGGAAGAGGTTGCTGCTGTAGCAGAGAAAGGGATGTTGTATAGACCAAATTATTGTGACAAGTATGGGAGACCAGTGATTGTAATGAGACCTTGCAACAAGAAATCAACACCAGCACAGGACATGATTAAGTATTTTGTATACTGCATGGAGAATGCTATTATATATCTGTCACCACACCAGGAACAGTTGGCCTGGCTGATAGATTTCCAGGGTGCCAAGATGTCAGATGTATCATTCAAGACGTCACGTGAAACTATCCATATATTACAAGAATATTATCCAAAGCATCTGGGTTTGGCAATGCTGTACAAAGCACCTAGGATCTTCCAACCATTCTTCACGATGCTAAGGCCCTTTCTAGAGACTGAGCTTTACAATAAAGTAAAGTTTGGATATTCGGACGACCTGAACACAAAGAAGATGTTGGAGGATTTGTTTGATATGGATAAACTTGAATCTGCATTTGGTGGGAATGGTGACACAGGATTTGACATGAATAGATATGCTGAGAGAATGAAAGAGGATGAAAGTAAGATCATTTCTTTCTGGACTCAGGCCAAGCCA

Predicted protein sequences of Glyma04g11360

Limit To All Plant Sequences

>Glyma04g11360.1   sequence type=predicted peptide   gene model=Glyma04g11360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVDLNKTASNGHDKMVISQEHQAKITKVRGLIGPLSDKESVYCSDASISRYLRSRNWNVKKAAQMLKQSLKWRKEYKPEEIRWEEVAAVAEKGMLYRPNYCDKYGRPVIVMRPCNKKSTPAQDMIKYFVYCMENAIIYLSPHQEQLAWLIDFQGAKMSDVSFKTSRETIHILQEYYPKHLGLAMLYKAPRIFQPFFTMLRPFLETELYNKVKFGYSDDLNTKKMLEDLFDMDKLESAFGGNGDTGFDMNRYAERMKEDESKIISFWTQAKP

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