Glyma04g11330 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g11330

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9732994
stop:	9738077
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78070	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr1:29355219-29358368 FORWARD LENGTH=449	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4532	KOG	WD40-like repeat containing protein	JGI		ISS
PTHR22847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22847:SF188	Panther	WD-40 REPEAT FAMILY PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G8A379	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-40 repeat family n=1 Tax=Medicago truncatula RepID=G8A379_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JVG7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVG7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g11330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11330

Paralog	Evidence	Comments
Glyma06g11030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g104200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g11330

Limit To All Plant Sequences

>Glyma04g11330.1   sequence type=CDS   gene model=Glyma04g11330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCACTTCAACAACGACGATCTCGAGTACGTTGTCGACGAGTACTACGACGTTCCCGATTTTGCAGTCGAAGACACCTCCTCCGACATTGTTCCTGAACTAACCTCCGATGTTGACTCCGACTTCGAAGACGAGTTTCCAACGAGTAATGCGAAGACTGATACCACTGCTTCCGAAGCCAGAAACGGGAAAGATATACAAGGAATCCCGTGGGAGAGGCTTAATTATAGCAGAGACAAATACCGCGAGACCAGACTCAAGCAGTACAAAAACTACCAGAACTTCTCTCGCTCTCGTCACGACCTCCGCAAGGAGTGTTTGGAAGTGCAGAAGGGGGAGACTTTCTATGACTTCTTCTTCAATACCAGGCTTGTCAAATCCACTATTGTGCACTTTCAGCTGAGGAATTTGTTGTGGGCAACTTCGAAGCATGATGTATACTTTATGCAAAACTATTCAGTGATGCACTGGTCCGCATTACTACGAAGGGGTAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCAACCCTTAAGCGTCCTGGATTTTTAGCTCAACCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCAGGGTGAGCTTATATGTAAGAATTTGAAACATCCTGGAGTTCTATTCTGTGGTAAAATAACTACAGATGATAATGCCATAACCAATGCTGTGGATGTTTACAGCAATCCTGCTGGGTCATTGAGGGTCATCACAGCAAATAATGATTTCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAACACTTCTGTTAGTCCGGATGGAAAGTTGTTAGCTGTTCTTGGGGACAGTACTGAGTGCTTGATAGCTGATGCTAACACCGGAAAGATTACTGGGAGCCTAAAAGGGCACTTGGACTACTCTTTTTCATCAGCTTGGCACCCAGATGGACAAATATTGGCCACTGGGAATCAGGACAAAACATGCAGATTGTGGGACATAAGAAATCTTTCACAGTCTATGGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCCCTAAGATTCACATCTGATGGACGATTTTTGGCCATGGCTGAGCCTGCAGACTTTGTCCATATTTTTGACTCACATTCTGGTTATGAACAAGGTCAAGAGATAGATCTATTTGGCGAGATTGCTGGCATATCCTTTAGCCCGGACACAGAGGCTCTATTTGTGGGTATTGCTGACCGAACCTATGGTAGCTTGTTAGAGTTCAACAGAAAACGTCACTATAATTACCTAGACTCGTTTTGA

Predicted protein sequences of Glyma04g11330

Limit To All Plant Sequences

>Glyma04g11330.1   sequence type=predicted peptide   gene model=Glyma04g11330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHFNNDDLEYVVDEYYDVPDFAVEDTSSDIVPELTSDVDSDFEDEFPTSNAKTDTTASEARNGKDIQGIPWERLNYSRDKYRETRLKQYKNYQNFSRSRHDLRKECLEVQKGETFYDFFFNTRLVKSTIVHFQLRNLLWATSKHDVYFMQNYSVMHWSALLRRGKEVLNVAKPIIPTLKRPGFLAQPVSRVQISTMTVKENLMVAGGFQGELICKNLKHPGVLFCGKITTDDNAITNAVDVYSNPAGSLRVITANNDFQVRVFDAENFASLGCFKYDWSVNNTSVSPDGKLLAVLGDSTECLIADANTGKITGSLKGHLDYSFSSAWHPDGQILATGNQDKTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYEQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRKRHYNYLDSF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain