Glyma04g11310 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g11310

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9724804
stop:	9727607
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38260	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF833) \| chr4:17937077-17938210 REVERSE LENGTH=275	SoyBase	E_val: 2.00E-97	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2342	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR17985	Panther	SER/THR-RICH PROTEIN T10 IN DGCR REGION	JGI		ISS
PF05742	PFAM	Protein of unknown function (DUF833)	JGI		ISS
UniRef100_C6T8N2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T8N2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G8A381	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ser/Thr-rich protein T10 in DGCR region n=1 Tax=Medicago truncatula RepID=G8A381_MEDTR	SoyBase	E_val: 3.00E-161	ISS

Expression Patterns of Glyma04g11310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11310

Paralog	Evidence	Comments
Glyma06g11020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g104100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g11310

Limit To All Plant Sequences

>Glyma04g11310.2   sequence type=transcript   gene model=Glyma04g11310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAATATACATTGTTCTGTTCGGTCAGTGGTGCAGCCAACTAACTCAACAATTCTGAACAATGTGTATAGCTTTGTTTCTTTGGCAATGCCACCCACTGTACCCTTTTCTTCTTTTGAATAACAGAGATGAATATCACAATAGGCCTACGAAGCCAGTGTCTTGGTGGGAAGATTGTGATATTTTGGCAGGAAGGGACGAAATAGCAATGGGAACATGGTTGGCTTGTTCCACACAAGGAAGGGTGGCTTTTCTCACCAATGTTTTGGAGCTTCATACCCTCCCTGAGGCCAAAAGTCGTGGAGACCTACCCGTACTATTTCTCAAGAGCAGCAAAAAACCGAAAGAATTTGCGGAAAGCCTAAAATCAGAGGCTCATTATTACAACGGGTTCAACTTAATCGTGGCTGATATTGTCTCGAATTCAATGGTGTACATCTCCAACAGGCCCAAGGGACAACCTATTACCATTCAAGAGGTTCCACCAGGGTTGCATGTACTTTCAAATGATAAGTTAGATTCGCCATGGCATAAGGCTCTGCGCCTAGAATTCAGTTTCAAAGAACATGTTGCCAAACATGGGGAAGGTGAGATACCTGTGAAGGAGGTGATTCAAAAGCTAATGAAGGACACAGTTAAAGCTGACAAAAACTCACTACCTCGTATTTGTTCACTTGATTGGGAATTCAATCTGAGCTCCATTTTTGTTGAAGTAGAAACACCACTGGTAAGTTAAGAATTGCATCCATATTAATTATTCCTATCATAATCATGGAATGTATGACCTTTGACTTACAGGGTTTATATGGCACTAGGAGTAGTGCTGCATTAACCGTAAGATCAAGTGGTGAAGCAAGCTTTTATGAGGTTTATCTGGATGACACAAAGTGGAAGGAACATGTTATCGATTTCCGTATCGGGAAGTTGAACTATGTCACGGATGAAGTAGCCTAGGGCAAAAGTAATATATAGCACAATGCTAGCTTTACTATGCTTAATTAATAAACTCCATCACTCATAAGCGAGGAAGGATCAAGATCAATTGATCCATTCTCTTCTTATTTATGTAATTGATGATATTGAAATGATATGCCGTCAATAAGCTAGCACGGCTAACAGAGTGCATGTATGAAGATTAGCTAATGAAATAAAGTTTATGATGAATAACATACAAAATTGTACCGGCCAAATGGAATTTAATTCTCCCAGCTTTTACTAAACCA

>Glyma04g11310.3   sequence type=transcript   gene model=Glyma04g11310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAATATACATTGTTCTGTTCGGTCAGTGGTGCAGCCAACTAACTCAACAATTCTGAACAATGTGTATAGCTTTGTTTCTTTGGCAATGCCACCCACTGTACCCTTTTCTTCTTTTGAATAACAGAGATGAATATCACAATAGGCCTACGAAGCCAGTGTCTTGGTGGGAAGATTGTGATATTTTGGCAGGAAGGGACGAAATAGCAATGGGAACATGGTTGGCTTGTTCCACACAAGGAAGGGTGGCTTTTCTCACCAATGTTTTGGAGCTTCATACCCTCCCTGAGGCCAAAAGTCGTGGAGACCTACCCGTACTATTTCTCAAGAGCAGCAAAAAACCGAAAGAATTTGCGGAAAGCCTAAAATCAGAGGCTCATTATTACAACGGGTTCAACTTAATCGTGGCTGATATTGTCTCGAATTCAATGGTGTACATCTCCAACAGGCCCAAGGGACAACCTATTACCATTCAAGAGGTTCCACCAGGGTTGCATGTACTTTCAAATGATAAGTTAGATTCGCCATGGCATAAGGCTCTGCGCCTAGAATTCAGTTTCAAAGAACATGTTGCCAAACATGGGGAAGGTGAGATACCTGTGAAGGAGGTGATTCAAAAGCTAATGAAGGACACAGTTAAAGCTGACAAAAACTCACTACCTCGTATTTGTTCACTTGATTGGGAATTCAATCTGAGCTCCATTTTTGTTGAAGTAGAAACACCACTGGAGTAGTGCTGCATTAACCGTAAGATCAAGTGGTGAAGCAAGCTTTTATGAGGTTTATCTGGATGACACAAAGTGGAAGGAACATGTTATCGATTTCCGTATCGGGAAGTTGAACTATGTCACGGATGAAGTAGCCTAGGGCAAAAGTAATATATAGCACAATGCTAGCTTTACTATGCTTAATTAATAAACTCCATCACTCATAAGCGAGGAAGGATCAAGATCAATTGATCCATTCTCTTCTTATTTATGTAATTGATGATATTGAAATGATATGCCGTCAATAAGCTAGCACGGCTAACAGAGTGCATGTATGAAGATTAGCTAATGAAATAAAGTTTATGATGAATAACATACAAAATTGTACCGGCCAAATGGAATTTAATTCTCCCAGCTTTTACTAAACCA

Coding sequences of Glyma04g11310

Limit To All Plant Sequences

>Glyma04g11310.1   sequence type=CDS   gene model=Glyma04g11310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTATAGCTTTGTTTCTTTGGCAATGCCACCCACTGTACCCTTTTCTTCTTTTGAATAACAGAGATGAATATCACAATAGGCCTACGAAGCCAGTGTCTTGGTGGGAAGATTGTGATATTTTGGCAGGAAGGGACGAAATAGCAATGGGAACATGGTTGGCTTGTTCCACACAAGGAAGGGTGGCTTTTCTCACCAATGTTTTGGAGCTTCATACCCTCCCTGAGGCCAAAAGTCGTGGAGACCTACCCGTACTATTTCTCAAGAGCAGCAAAAAACCGAAAGAATTTGCGGAAAGCCTAAAATCAGAGGCTCATTATTACAACGGGTTCAACTTAATCGTGGCTGATATTGTCTCGAATTCAATGGTGTACATCTCCAACAGGCCCAAGGGACAACCTATTACCATTCAAGAGGTTCCACCAGGGTTGCATGTACTTTCAAATGATAAGTTAGATTCGCCATGGCATAAGGCTCTGCGCCTAGAATTCAGTTTCAAAGAACATGTTGCCAAACATGGGGAAGGTGAGATACCTGTGAAGGAGGTGATTCAAAAGCTAATGAAGGACACAGTTAAAGCTGACAAAAACTCACTACCTCGTATTTGTTCACTTGATTGGGAATTCAATCTGAGCTCCATTTTTGTTGAAGTAGAAACACCACTGGGTTTATATGGCACTAGGAGTAGTGCTGCATTAACCGTAAGATCAAGTGGTGAAGCAAGCTTTTATGAGGTTTATCTGGATGACACAAAGTGGAAGGAACATGTTATCGATTTCCGTATCGGGAAGTTGAACTATGTCACGGATGAAGTAGCCTAG

>Glyma04g11310.2   sequence type=CDS   gene model=Glyma04g11310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTATAGCTTTGTTTCTTTGGCAATGCCACCCACTGTACCCTTTTCTTCTTTTGAATAACAGAGATGAATATCACAATAGGCCTACGAAGCCAGTGTCTTGGTGGGAAGATTGTGATATTTTGGCAGGAAGGGACGAAATAGCAATGGGAACATGGTTGGCTTGTTCCACACAAGGAAGGGTGGCTTTTCTCACCAATGTTTTGGAGCTTCATACCCTCCCTGAGGCCAAAAGTCGTGGAGACCTACCCGTACTATTTCTCAAGAGCAGCAAAAAACCGAAAGAATTTGCGGAAAGCCTAAAATCAGAGGCTCATTATTACAACGGGTTCAACTTAATCGTGGCTGATATTGTCTCGAATTCAATGGTGTACATCTCCAACAGGCCCAAGGGACAACCTATTACCATTCAAGAGGTTCCACCAGGGTTGCATGTACTTTCAAATGATAAGTTAGATTCGCCATGGCATAAGGCTCTGCGCCTAGAATTCAGTTTCAAAGAACATGTTGCCAAACATGGGGAAGGTGAGATACCTGTGAAGGAGGTGATTCAAAAGCTAATGAAGGACACAGTTAAAGCTGACAAAAACTCACTACCTCGTATTTGTTCACTTGATTGGGAATTCAATCTGAGCTCCATTTTTGTTGAAGTAGAAACACCACTGGTAAGTTAA

>Glyma04g11310.3   sequence type=CDS   gene model=Glyma04g11310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTATAGCTTTGTTTCTTTGGCAATGCCACCCACTGTACCCTTTTCTTCTTTTGAATAACAGAGATGAATATCACAATAGGCCTACGAAGCCAGTGTCTTGGTGGGAAGATTGTGATATTTTGGCAGGAAGGGACGAAATAGCAATGGGAACATGGTTGGCTTGTTCCACACAAGGAAGGGTGGCTTTTCTCACCAATGTTTTGGAGCTTCATACCCTCCCTGAGGCCAAAAGTCGTGGAGACCTACCCGTACTATTTCTCAAGAGCAGCAAAAAACCGAAAGAATTTGCGGAAAGCCTAAAATCAGAGGCTCATTATTACAACGGGTTCAACTTAATCGTGGCTGATATTGTCTCGAATTCAATGGTGTACATCTCCAACAGGCCCAAGGGACAACCTATTACCATTCAAGAGGTTCCACCAGGGTTGCATGTACTTTCAAATGATAAGTTAGATTCGCCATGGCATAAGGCTCTGCGCCTAGAATTCAGTTTCAAAGAACATGTTGCCAAACATGGGGAAGGTGAGATACCTGTGAAGGAGGTGATTCAAAAGCTAATGAAGGACACAGTTAAAGCTGACAAAAACTCACTACCTCGTATTTGTTCACTTGATTGGGAATTCAATCTGAGCTCCATTTTTGTTGAAGTAGAAACACCACTGGAGTAG

Predicted protein sequences of Glyma04g11310

Limit To All Plant Sequences

>Glyma04g11310.1   sequence type=predicted peptide   gene model=Glyma04g11310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCIALFLWQCHPLYPFLLLNNRDEYHNRPTKPVSWWEDCDILAGRDEIAMGTWLACSTQGRVAFLTNVLELHTLPEAKSRGDLPVLFLKSSKKPKEFAESLKSEAHYYNGFNLIVADIVSNSMVYISNRPKGQPITIQEVPPGLHVLSNDKLDSPWHKALRLEFSFKEHVAKHGEGEIPVKEVIQKLMKDTVKADKNSLPRICSLDWEFNLSSIFVEVETPLGLYGTRSSAALTVRSSGEASFYEVYLDDTKWKEHVIDFRIGKLNYVTDEVA*

>Glyma04g11310.2   sequence type=predicted peptide   gene model=Glyma04g11310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCIALFLWQCHPLYPFLLLNNRDEYHNRPTKPVSWWEDCDILAGRDEIAMGTWLACSTQGRVAFLTNVLELHTLPEAKSRGDLPVLFLKSSKKPKEFAESLKSEAHYYNGFNLIVADIVSNSMVYISNRPKGQPITIQEVPPGLHVLSNDKLDSPWHKALRLEFSFKEHVAKHGEGEIPVKEVIQKLMKDTVKADKNSLPRICSLDWEFNLSSIFVEVETPLVS*

>Glyma04g11310.3   sequence type=predicted peptide   gene model=Glyma04g11310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCIALFLWQCHPLYPFLLLNNRDEYHNRPTKPVSWWEDCDILAGRDEIAMGTWLACSTQGRVAFLTNVLELHTLPEAKSRGDLPVLFLKSSKKPKEFAESLKSEAHYYNGFNLIVADIVSNSMVYISNRPKGQPITIQEVPPGLHVLSNDKLDSPWHKALRLEFSFKEHVAKHGEGEIPVKEVIQKLMKDTVKADKNSLPRICSLDWEFNLSSIFVEVETPLE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain