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Report for Sequence Feature Glyma04g11260

Feature Type:gene_model
Chromosome:Gm04
Start:9627306
stop:9628841
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g11260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27080AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11566383-11567165 FORWARD LENGTH=260 SoyBaseE_val: 3.00E-37ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_G7K2X8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Avr9/Cf-9 rapidly elicited protein n=1 Tax=Medicago truncatula RepID=G7K2X8_MEDTR SoyBaseE_val: 3.00E-31ISS
UniRef100_UPI000233A237UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A237 related cluster n=1 Tax=unknown RepID=UPI000233A237 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g11260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11260
ParalogEvidenceComments
Glyma06g11000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g103700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g11260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g11260
>Glyma04g11260.2   sequence type=CDS   gene model=Glyma04g11260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGCGGGTGTTGTTGCCATCACCGCCACCGCCACCGCCACCTCTCGAAAAGAAACATAGTACCAACAAACTCGAGTTACCAGACTTCAACCCTGGCACCTACGTTGTCCAGGTCCCCAAGGACCAAGTCTACCGTGTTCCGCCGCCGGAAAACGCCCGAATCGCCGAGAGCCATAAGAAAGCCCCTCCCAAGGCGGCGAAAACGTCACGCTGCTGCTTGTTTTGCGTATTGTTCTTCATTATATTCTTCGTCCTTCTCATTCTTCTAGGAGCCGTTCTAGGTGGTCTTTTTTCCATGTTACTCACACCAAAGGACCCTCAGTTTTCCATCACACGCTTTAAGGTGGTGGAGACCAAACCCCACCCCAAATACGACGTCACTTTGGAAGTTCACAATCTAAATTCCGACGTGGGAGTTTCGTATAAAAACAAAGGCCATGTCTCCCTCTCTCTTAGGCGACAAGAGGTTGCTTCAGGAGCGTACCCTAGTTTCAATCAAGACGCTCACGATAGGACAACGTTTGGCGTAACTTTAACATCCTCAAAAGTCGGTCTCCCAAAGGAGGTGGAGGAAAGCGTCACGAACGATAAGAAGAAAGTGAATGTGACATTCTCTTTGGCCATTCACGCCCTAGCACGCATGAAAATGGGCTTGTTGCGTAGTGGGACAATGAAATTCGATGTTACGTGCAATGTGAAGTTGGATACATTGGCCAAAACCACTCAAGTACTCTCTCAACAATGCGAAACTAAACGACACTAG
Predicted protein sequences of Glyma04g11260
>Glyma04g11260.2   sequence type=predicted peptide   gene model=Glyma04g11260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEERVLLPSPPPPPPPLEKKHSTNKLELPDFNPGTYVVQVPKDQVYRVPPPENARIAESHKKAPPKAAKTSRCCLFCVLFFIIFFVLLILLGAVLGGLFSMLLTPKDPQFSITRFKVVETKPHPKYDVTLEVHNLNSDVGVSYKNKGHVSLSLRRQEVASGAYPSFNQDAHDRTTFGVTLTSSKVGLPKEVEESVTNDKKKVNVTFSLAIHALARMKMGLLRSGTMKFDVTCNVKLDTLAKTTQVLSQQCETKRH*






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