Glyma04g11240 - SoyBase

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Report for Sequence Feature Glyma04g11240

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9556958
stop:	9558613
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78110	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). \| chr1:29391879-29392907 FORWARD LEN	SoyBase	E_val: 1.00E-82	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JVG1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JVG1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LM19	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F16L1.4 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LM19_ARATH	SoyBase	E_val: 1.00E-47	ISS

Expression Patterns of Glyma04g11240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11240

Paralog	Evidence	Comments
Glyma06g10980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g103500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g11240

Limit To All Plant Sequences

>Glyma04g11240.1   sequence type=CDS   gene model=Glyma04g11240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAATTAAGAGAAGGCAAGGCATTAGCACCCTCTGCTGATCTGTTAGTATGCTTCCCATCTCGGGCTCATCTTACGCTAATGCCAAAGCCCATCTGCAGCCCGGCCCGGCCCGCGGAGCCCAACAAGCGCCACCACCGTAAGAAATCGTTCTCCAGAGGAGGCGGGGGCCCAGCGAGTCCTCTGTTATGGGCCAAAACAAAGTCAATGGGGTCGGAAATTACAGAACCAACCTCCCCGAAGGTGACGTGCGCCGGGCAGATCAAGGTACGGCCCAAAACGACGTCGTGCAGGAGCTGGCAATCGGTGATGGAGGAGATAGAGAAAATCCACACTGACAAGAAACAGAGGAAGCGTCTGGGCTGGGCCGAGACGCTCGGTTTCAAGAAGGAGATAATGCAGTTCTTGACGTGTTTGCGAAGCATAAGGTTCGACCTTAGATGCTTCGGGTCCTTCTCCGAAACCGACATCGTCACGGAAGAAGAAGAAGAAGAAGAAGAAGACGTGGGTGTGGAAAGCGATGACAACGAGGCATCGAGGACTGTTTTCTCGAAATGGTTCATGGTGTTGCAGCAAGAGAATGAGAGCAAGAACCGGAGAGAAGAGACAGAGGAGAGAGATTATGGTAATGAGGAGGAAAGTGTGTCGGTTCCTCCTCCGAACGCATTATTGCTCATGCGATGTAGTTCTGCGCCGGCGAAAAGTTGGGTGAGAGAGAGAGAAAAAGAAAAAGGGGAAAAGAAGGGGCAGAGTTTAAAGTCGTTGATGGAGAAGGAGAATGTTGTGGTGATGCGATATGATTCTGATTTTTACGACATTTCTTCTGAGGTTGGCGGCACCAGTGATCTCATGTTCAGGAGTCGAAGTTGGAAAACATGA

Predicted protein sequences of Glyma04g11240

Limit To All Plant Sequences

>Glyma04g11240.1   sequence type=predicted peptide   gene model=Glyma04g11240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKLREGKALAPSADLLVCFPSRAHLTLMPKPICSPARPAEPNKRHHRKKSFSRGGGGPASPLLWAKTKSMGSEITEPTSPKVTCAGQIKVRPKTTSCRSWQSVMEEIEKIHTDKKQRKRLGWAETLGFKKEIMQFLTCLRSIRFDLRCFGSFSETDIVTEEEEEEEEDVGVESDDNEASRTVFSKWFMVLQQENESKNRREETEERDYGNEEESVSVPPPNALLLMRCSSAPAKSWVREREKEKGEKKGQSLKSLMEKENVVVMRYDSDFYDISSEVGGTSDLMFRSRSWKT*

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