Glyma04g11230 - SoyBase

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Report for Sequence Feature Glyma04g11230

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9543136
stop:	9547040
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65160	AT	Annotation by Michelle Graham. TAIR10: tetratricopeptide repeat (TPR)-containing protein \| chr5:26031457-26033668 REVERSE LENGTH=593	SoyBase	E_val: 2.00E-137	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
KOG1126	KOG	DNA-binding cell division cycle control protein	JGI		ISS
PTHR22904	Panther	CHAPERONE BINDING PROTEIN	JGI		ISS
PF00085	PFAM	Thioredoxin	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_G7KAB8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Small glutamine-rich tetratricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KAB8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A233	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A233 related cluster n=1 Tax=unknown RepID=UPI000233A233	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g11230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11230

Paralog	Evidence	Comments
Glyma06g10970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g103400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g11230

Limit To All Plant Sequences

>Glyma04g11230.1   sequence type=CDS   gene model=Glyma04g11230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGGAAAACCAAGAACAAAGTGGAGGTTCAATTGGGTTGCGGTTTGGTGGGGAGAATTTTCCATCTCAAAACCAATAATAGGCCTAGAAAATCCTCTGTTCATTCACTACCCCTGAAGCCTTGCAACACTGCACAACAGAGGGATCAGGGCAAAAACGAATCCAAAGCCCCTCCAAACCATGAACCAAAAGATAGCTCCATTGAAACCATTCCTACACTGAAAGGGGAGCAGAATCCAGCAAGAAAGAGTAGACAACAACAGAAAGATCACCCTGTTGTTAACTCTCTGGAACTTGCCAGGATAAGTACTAGTACCAGTCATCATCAAAACTACGGGACGAAATCCCCGGCCAAAGAATTTGTGTTACCAATCACTGGGAATTTGCTTGTGAATAGCAGCCCAAGAACTAGTGTCACAAAGAGCAAAGAGTTGAACTCTTTGTCCGGTTCCTGTTCTTACAACAGTAATAGTACTAACAAAGGCATGATGGGGAACATCATGAGGAAGAACAGCGATGAGCTTGGGCAATTTCGGAGTCTGAGGAACAGCAGAGTGGACCCTGAGGTGTTGAAGTCCATGGGGAATGAAGCGTACAAGCAGGGAAGATTTGAAGAGGCTTTGGCTTTGTATGACAGAGCCATTGCTGTTGACTCCAAGAAAGCAACATATCATTGCAACAAGAGCGCGGCTTTGATAAGCTTGGGAAGGTTTCTGCAGGCAATTGTTGAGTGTGAGGAAGCTATCAGGTTGGAGCCTTCGTATGGCAGAGCCCACACCCGTTTAGCAACAATTTATTTCAGATTGGGAGAGGCTGAAAAGGCACTGAATTGCAATGAAACAAGCCCATGTGTTGATTCCGTACTTGCTTTCCAGGCTCAGGCTCTTCAAAATCACCTTAGCAAATGCACTGAAGCTCGGAAAGTCAAAGATTGGAAAGTTATATTAAAGGAATCACAGGCTGCAATATCCTTGGGTGCTGATTCAGCTCCACTGGTCTATTGTTTACATACTGAAGCCTTGCTGAAGCTCCTAAGACATCAAGAGGCACACGCTACCTACGAGAAAATGCCAAAATTTGACCTTGATTATTCTAACAAATTATTTGGCCCGGTTCGTAGTGCTTACCTATTGATGATAGGCACACACATTTACTTGGCAACCGGCAGGTTTGAGGATGCAGTGATAGCATCTCAGCAAGCATCTAAGTTAGATCCAAGTAGCTTTGAGGTGAATGCAGTGGTAAGGAGGGCCAGAGCAGTGGCATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCACGGAAGCATATGCTGTATACAATGAAGGACTAGAGCATGATCCATTCAACTCAGTTCTGCTATGCAATAGAGCAGCATGTCGTTCTAAGCTAGGTCAATTCGAGAAAGCAATTGAAGATTGTAATGTGGCACTTATAGTTCAGCCAAGTTATAGCAAGGCAAGGTTGAGGAGGGCAGATTGCAATGCCAAGTTGGAAAGATGGGAAGCTGCGATTCAAGATTATGAAATGCTGTTAAGAGAAAAGCCAGGAGATGAGGAGGTGGCCAGGGCCCTGTTTGAGACCCAGCTCCAACTCAAGACGTTGCGTGGTGAAGATATTAAGGACTTGAAATTTGGCTCAAATTTGTTTTTCATCTCAAGCAATGATCGGTTTAGACATTATGTAACATCACCTGGGATGTCTGTGGTGCTTTTCTGTAACAAGGCAACCCACAAACAAGTGTTATTGGTGTTGGAGCAAACCTGCAAGAGATTTCCATCAGTTAATTTTCTTAAGGTTGAGATTGAAGACCACCCTTACTTGGCAAAATCAGAAGGTGTGAACTGCATCCCAGCTTTTAAAATATACAAGAATGGATCAAGGGTTAAAGAAATTCCAGGCAGCAACCACGACTTGTTGGAAAAATTAGTTAAATTATATAGCAACTGA

Predicted protein sequences of Glyma04g11230

Limit To All Plant Sequences

>Glyma04g11230.1   sequence type=predicted peptide   gene model=Glyma04g11230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGKTKNKVEVQLGCGLVGRIFHLKTNNRPRKSSVHSLPLKPCNTAQQRDQGKNESKAPPNHEPKDSSIETIPTLKGEQNPARKSRQQQKDHPVVNSLELARISTSTSHHQNYGTKSPAKEFVLPITGNLLVNSSPRTSVTKSKELNSLSGSCSYNSNSTNKGMMGNIMRKNSDELGQFRSLRNSRVDPEVLKSMGNEAYKQGRFEEALALYDRAIAVDSKKATYHCNKSAALISLGRFLQAIVECEEAIRLEPSYGRAHTRLATIYFRLGEAEKALNCNETSPCVDSVLAFQAQALQNHLSKCTEARKVKDWKVILKESQAAISLGADSAPLVYCLHTEALLKLLRHQEAHATYEKMPKFDLDYSNKLFGPVRSAYLLMIGTHIYLATGRFEDAVIASQQASKLDPSSFEVNAVVRRARAVASARMSGNLLFKASKFTEAYAVYNEGLEHDPFNSVLLCNRAACRSKLGQFEKAIEDCNVALIVQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFETQLQLKTLRGEDIKDLKFGSNLFFISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVNCIPAFKIYKNGSRVKEIPGSNHDLLEKLVKLYSN*

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