Glyma04g11211 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g11211

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9500346
stop:	9503393
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11211

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39720	AT	Annotation by Michelle Graham. TAIR10: VQ motif-containing protein \| chr4:18429992-18430864 REVERSE LENGTH=290	SoyBase	E_val: 2.00E-17	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_I1JVF8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVF8_SOYBN	SoyBase	E_val: 5.00E-120	ISS
UniRef100_Q6AVF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q6AVF5_ORYSJ	SoyBase	E_val: 6.00E-07	ISS

Expression Patterns of Glyma04g11211

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g11211 not represented in the dataset	Glyma04g11211 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11211

Paralog	Evidence	Comments
Glyma06g10951	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11211 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g103300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11211

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g11211

Limit To All Plant Sequences

>Glyma04g11211.1   sequence type=CDS   gene model=Glyma04g11211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTGGCAACAGTGGAAGCATCTCTTCTAGCGATGATGAATACGATTCATCATCACACGCTCATCCATCGTTCCTCAATCATTTTGGTTCCATCTCCGACCCGCAACAACCATCTCTTGTTCCTTCTCATCCCTCAATGTTTGATCTTTCCTCAAACTATCTCCACTCTCTCTCACAATCCCACCCAAACCCCCATAATTCCTTCTTAAACTTAGACTCTCAAGGCCAAAGATCTGAACCCAATTGCACCCTCCATGAAAGCCTCCCGTCTTCATCAGCAATACCAACAACAACAAATCAATACTTGTTGGGCCACGACAACCTTAATAATAATGCAAGACAACAACTCCCATCATCCCCACAGACCAACAACCTCATACGCAACTCGAAGAAACGAAGCAGAGCTTCAAGGCGTGCACCCACCACCGTTCTCACCACCGACACCAACAACTTCAGATCCATGGTTCAAGAGTTCACCGGAATCCCTGCACCCCCTTTCTCACCTTCCTTCTCTCGCCGCATCCCTCTTCGCCCAAACCCTTTGCTTTCAACAACTTCATCAAGGACTTTGTTACATAACAACAGCATCTATGTTTCTCCTAATAATAACTCCCTTAATTACCAACTACTTCCCGATCTATCTTTACCCTATCAGCCCCCACCACAGAATCTCATGCAAAATATTCACCCTATTCCCTCATTCCACCCCTCTTCTTCTCTTCATACTCTTGTCCCTACAGGGTTTGGTGCAAAGTCTTTATCCACCATGCCCACGCTTGATGCGCATGATCTGGTGGGTGCACATGTACAAGGTCATCATGAGCATGTGGTTTCTGAGGGCATGTTTCTGAGGAGTGACGGCGGTGGAACTGGAGGAGGGAGAAGAGATCCGTTTAGGTGCTTAGATAATGAGAATAATAATAATTATGGCGGTTGA

Predicted protein sequences of Glyma04g11211

Limit To All Plant Sequences

>Glyma04g11211.1   sequence type=predicted peptide   gene model=Glyma04g11211   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSGNSGSISSSDDEYDSSSHAHPSFLNHFGSISDPQQPSLVPSHPSMFDLSSNYLHSLSQSHPNPHNSFLNLDSQGQRSEPNCTLHESLPSSSAIPTTTNQYLLGHDNLNNNARQQLPSSPQTNNLIRNSKKRSRASRRAPTTVLTTDTNNFRSMVQEFTGIPAPPFSPSFSRRIPLRPNPLLSTTSSRTLLHNNSIYVSPNNNSLNYQLLPDLSLPYQPPPQNLMQNIHPIPSFHPSSSLHTLVPTGFGAKSLSTMPTLDAHDLVGAHVQGHHEHVVSEGMFLRSDGGGTGGGRRDPFRCLDNENNNNYGG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain