Glyma04g11180 - SoyBase

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Report for Sequence Feature Glyma04g11180

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9486704
stop:	9490556
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78140	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:29401937-29403878 REVERSE LENGTH=355	SoyBase	E_val: 7.00E-151	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF157	Panther	METHYLTRANSFERASE-RELATED	JGI		ISS
PF08241	PFAM	Methyltransferase domain	JGI		ISS
UniRef100_B9RJI9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RJI9_RICCO	SoyBase	E_val: 4.00E-149	ISS
UniRef100_I1JVF7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVF7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g11180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11180

Paralog	Evidence	Comments
Glyma06g10940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g103100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g11180

Limit To All Plant Sequences

>Glyma04g11180.1   sequence type=CDS   gene model=Glyma04g11180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATAGGCGTAGCAGTTTCCGGTATGTACACGCTCACTCCAACTCTCTCTTCATTCAAGCACCCCACGCGCCTCTTCTCACGCGCTGCTTTCACTGCAAAGCTTCCACTTCAATTTCGAGCTTCTTCAACGTCCTTCATCGACACCGAAACCAATCCAAGAGAATCCAACGTAGTAGTAGTTGAAAAGGACGTAAGCAGTAGAAGCAGCAATTCGTTGGCTTGTCCCGTATGTTACGATTCCTTGACATGGAACGGTGATCCTGGTTTCTCCGTAGATACTATCACTGGATCTAGTTTTCAATGCAGCACCTGTCAGAAAACATATATTGGTAACCAAACGCATCTCGATCTCACCGCTACAGGTGGAGCTAAGAGCTATGGTGAATCGATGCCAGCTTCCACAGAGCTTTTCAGGGTGCCATTGATATCATTTCTCTATGAGAGGGGCTGGCGTCAAACCTTTTCTGTGTGGGGTGGTTTTCCTGGTCCTGAGAAAGAGTTTGAATTGATGAAGGGTTTCTTAAAGCCAATATTGGGAGGAAATATCATTGATGCTAGTTGTGCAAGTGGATTATTTTCAAGATTATTTGCAAAAAGTGGACTGTTTTCTTTCATTGTTGCTCTAGACTACTCAGAAAACATGTTGCAGCAATGTTATGAATTCATTCAGCAGGAAGAGAACTTTCCAAAAGAGAACTTCATCTTGGTTAGAGCAGACATATCTAGGCTCCCCTTTGTTTCCAGTTCTGTTGATGCTGTACATGCAGGCGCAGCTCTCCACTGTTGGCCTTCACCATTAGCTGCTGTAGCTGAAATAAGTCGTGTTTTACGACCTGGAGGTGTATTTGTCGCAACCACTTACATACTTGATGGGCCTTTTTCTGTTATCCCATTTTTAAGTTCCCTGCGGCAGAATGTAAGGCAAGTGTCTGGGAGCTACATCTTTCTCTCTGAACGTGAACTTGAAGATCTCTGCAGGGCATGTGGGCTAGTTGGATTTAAATGCATTAGAAATGGGCTTTTTGTGATGATCTCTGCTACAAAGCCCAGTTAA

Predicted protein sequences of Glyma04g11180

Limit To All Plant Sequences

>Glyma04g11180.1   sequence type=predicted peptide   gene model=Glyma04g11180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIGVAVSGMYTLTPTLSSFKHPTRLFSRAAFTAKLPLQFRASSTSFIDTETNPRESNVVVVEKDVSSRSSNSLACPVCYDSLTWNGDPGFSVDTITGSSFQCSTCQKTYIGNQTHLDLTATGGAKSYGESMPASTELFRVPLISFLYERGWRQTFSVWGGFPGPEKEFELMKGFLKPILGGNIIDASCASGLFSRLFAKSGLFSFIVALDYSENMLQQCYEFIQQEENFPKENFILVRADISRLPFVSSSVDAVHAGAALHCWPSPLAAVAEISRVLRPGGVFVATTYILDGPFSVIPFLSSLRQNVRQVSGSYIFLSERELEDLCRACGLVGFKCIRNGLFVMISATKPS*

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