SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g11151

Feature Type:gene_model
Chromosome:Gm04
Start:9442436
stop:9446054
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g11151
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78160AT Annotation by Michelle Graham. TAIR10: pumilio 7 | chr1:29407900-29410184 FORWARD LENGTH=650 SoyBaseE_val: 2.00E-147ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003729GO-mf Annotation by Michelle Graham. GO Molecular Function: mRNA binding SoyBaseN/AISS
KOG2049 KOG Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) JGI ISS
PTHR12537Panther RNA BINDING PROTEIN PUMILIO-RELATED JGI ISS
PTHR12537:SF13Panther PUMILIO-RELATED JGI ISS
PF00806PFAM Pumilio-family RNA binding repeat JGI ISS
UniRef100_G7KAF0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pumilio domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KAF0_MEDTR SoyBaseE_val: 7.00E-153ISS
UniRef100_UPI000233A231UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A231 related cluster n=1 Tax=unknown RepID=UPI000233A231 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g11151
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g11151 not represented in the dataset
Glyma04g11151 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11151
ParalogEvidenceComments
Glyma06g10920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11151 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g102900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g11151
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g11151
>Glyma04g11151.1   sequence type=CDS   gene model=Glyma04g11151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCCCCCATGCTGAAGATGTCAGACGACAACAACAAACGAAACGCAGCAGAGGACGCAGAAACAAGATTCTGGTTGGACCCTGCATACCCCGTTTGGGGCCATGATTTCTCCAGAATCAACTTCTTCGATGCAACCCAAACCGATAACATGCCTTTCGAACCCTACGCTTCTTATTTCAATGAAACAGGAACCCTCCCATATGTTAACAACACCCAAACCAACATGGGTCTGGACCCTTACGCTTTTTGTTTCAACGAAACAGGAACCTTCCCATCCCTTCCCTATCATCAGCATGTCAACAATGTGCCTTTATTCGATAAAGGTTACACTCTTGGCACCCCAGATGATCACGACAACCTCGTGTATCATCACCTCGTCGATCAGAGGAGGAGGCAGCTAGAGGGTACATCTGATAATAACTATCAGATTCTCCGTGATCGTTACATGGCGGCTTCACAGTCTCTCCACGATGGAGGAGGAGTCAAAAGTCCCATTAGGTTTTCTCAGATAACGCCTCAACATCAATATCCTCCCAATGCCAATATTACCCCATCACATTATTACGTTGCTGCAAAACAAAAAGCTGAACTTTCCCCTTTTCTATCTCCGAGGAGAATCGGGGGAGACCCTGCTACAGCGTTTAGGTATGACAACAATGACGTTTTTCTACAAGGGAGAGATGCAAAACACTACTTTGAGAATGGGTACGGTTCTTACAGAAGGAGTCCTCGCGATGATGATGCTGCTGCAATTCATGACGTGGGTGGGAGTGTTGTTCCTAAGAACTTTTATTCTGCTGCTGCTCCTTCTGGTCAAAGAAGTGGTGGTGGTGATTTCTCATCACTGCCCATGCTGCTGGATTTTTATTCTGTGCCTGATGCGCAGTGCTACATTTACAACCTGGCAAAGGATCAGAATGGTTGTCGTTTTCTGCAGCGGATGGTGGATGAGGGGACCTACCAGGATATATGTATCGTGTTTGAGGGAATCATTGGGAATGTTGTTGAACTCATGATAGACTCTTTCGGGAATTATCTTGTGCAGAAGCTGCTCGATGTTTGCACCGACGATCAACTCCTGCAGATTGTGCTCTTGTTGACCAATCACCCAACCCAGCTCGTTAGAATCTCTTTAAATACTCACGGCACACGCGTGGTGCAGAAGTTGATCGAGACCCTCACCTCCGATGAACAAGTTTCACTGGTGAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATTAAGGATTTGAATGGAAATCACGTCATTCAACGTTGCTTGCAATGCTTTAGCTGTCAAGATAATCAGTTTATTTTTGATGCTGCTGTGAAGTTTTGTGTTGAAATAGCTACTCATCGGCATGGATGTTGTGTATTGCAATGTTGCATTCATCACTCAACAGGAAAGAATCGGGATAAGCTGGTCACAGAAATATGCAAACATGGACTTCTCCTCGCTCAGGATGCATTTGGAAATTATGTTGTTCAGTATGTTATAGAATCGGATACCCCAGCTGTCTCAGTCAAACTGCTTAGCCAGTTCAAAGGAAGCTTTGTAATTTTGTCTACACAGAAATTCAGCAGTCATGTGGTCGAAAAATGCCTTAAGCATATCGGAAACAGCAGGCCAAGGATAGTTGGAGAGTTAACGTCTGTTCCTCGCTTTGAACAGTTGTTGCAAGACCCATATGCCAACTATGTCATTCGATCTGCTTTACTTTTTACAAAGGGCCCTCTGCATGCATCTTTGGCTGAAATCGTTCGTGCTCACAAAGGGTTGCGCACCAGTCCATATTGCAAGAGGATTTTCTCGGGAAGCTTGCTCAAAAAGTGA
Predicted protein sequences of Glyma04g11151
>Glyma04g11151.1   sequence type=predicted peptide   gene model=Glyma04g11151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSPMLKMSDDNNKRNAAEDAETRFWLDPAYPVWGHDFSRINFFDATQTDNMPFEPYASYFNETGTLPYVNNTQTNMGLDPYAFCFNETGTFPSLPYHQHVNNVPLFDKGYTLGTPDDHDNLVYHHLVDQRRRQLEGTSDNNYQILRDRYMAASQSLHDGGGVKSPIRFSQITPQHQYPPNANITPSHYYVAAKQKAELSPFLSPRRIGGDPATAFRYDNNDVFLQGRDAKHYFENGYGSYRRSPRDDDAAAIHDVGGSVVPKNFYSAAAPSGQRSGGGDFSSLPMLLDFYSVPDAQCYIYNLAKDQNGCRFLQRMVDEGTYQDICIVFEGIIGNVVELMIDSFGNYLVQKLLDVCTDDQLLQIVLLLTNHPTQLVRISLNTHGTRVVQKLIETLTSDEQVSLVKSAIQPGFLDLIKDLNGNHVIQRCLQCFSCQDNQFIFDAAVKFCVEIATHRHGCCVLQCCIHHSTGKNRDKLVTEICKHGLLLAQDAFGNYVVQYVIESDTPAVSVKLLSQFKGSFVILSTQKFSSHVVEKCLKHIGNSRPRIVGELTSVPRFEQLLQDPYANYVIRSALLFTKGPLHASLAEIVRAHKGLRTSPYCKRIFSGSLLKK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo