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Report for Sequence Feature Glyma04g11090

Feature Type:gene_model
Chromosome:Gm04
Start:9359026
stop:9360552
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g11090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78170AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29414160-29414941 FORWARD LENGTH=221 SoyBaseE_val: 7.00E-23ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1JVE7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVE7_SOYBN SoyBaseE_val: 6.00E-156ISS
UniRef100_Q10QM7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q10QM7_ORYSJ SoyBaseE_val: 1.00E-13ISS

Expression Patterns of Glyma04g11090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11090
ParalogEvidenceComments
Glyma06g10880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g102400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g11090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g11090
>Glyma04g11090.1   sequence type=CDS   gene model=Glyma04g11090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTCGTTTCACAAGGCGCTGGCCGAGAGTACTCCAAAGCCAGAAATTCATGCAGAATTCGAAGCATCATCAAAGAAAAGAAAGTGGGAAGAGCCATTAACCGAAGGTTTCTTCAAGGATCAAATAGAGAAAAGGAAATCCGTCTTTGATATAGAGCTTCACCCTGAGACCCCTTTTTCTTCAGATAAATGGCGTCAATACCTCACTATTCAGTCAGGGCAGATACAGTTGTGTAACACAAGAACAACAACAGAGAACCCCAAAAAAAGCTCCGAAGAACCACCTTCTTCTCATCACATGAGTTTAAACCTTGAGCTAAATTTGACGTGTGAATCACCGAGGAAAAAAGAAGAAGGTTATGGTTATGAAATGAATGAGAAAAAGAGTTCTGGTTCTTCCCCTGGGGGTTTGAGTGAACGTGAGGATCTGTGTAAAAAAGATTCAGATGGTAAAATTCTTTCTCCCTCGTGGTTGTCATCATCTGAAGATGATTACAAAGAGATGGTTGCAACAGTTTGCATGCGCTGCCACATGTTGGTCATGCTATGCAAGTCATCTCCTTCATGTCCTAACTGCAAATTCATGCACCCACCAGATCAGAACCCTTCAAAATTCTTAAAGAGAAGATGCAGTCTCTTCTGCTAG
Predicted protein sequences of Glyma04g11090
>Glyma04g11090.1   sequence type=predicted peptide   gene model=Glyma04g11090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSFHKALAESTPKPEIHAEFEASSKKRKWEEPLTEGFFKDQIEKRKSVFDIELHPETPFSSDKWRQYLTIQSGQIQLCNTRTTTENPKKSSEEPPSSHHMSLNLELNLTCESPRKKEEGYGYEMNEKKSSGSSPGGLSEREDLCKKDSDGKILSPSWLSSSEDDYKEMVATVCMRCHMLVMLCKSSPSCPNCKFMHPPDQNPSKFLKRRCSLFC*






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