Glyma04g11070 - SoyBase

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Report for Sequence Feature Glyma04g11070

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9342992
stop:	9345087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G34640	AT	Annotation by Michelle Graham. TAIR10: peptidases \| chr1:12687706-12688427 REVERSE LENGTH=110	SoyBase	E_val: 5.00E-31	ISS
GO:0006465	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal peptide processing	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005787	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: signal peptidase complex	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
PF06645	PFAM	Microsomal signal peptidase 12 kDa subunit (SPC12)	JGI		ISS
UniRef100_C6SVQ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVQ4_SOYBN	SoyBase	E_val: 2.00E-75	ISS

Expression Patterns of Glyma04g11070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11070

Paralog	Evidence	Comments
Glyma06g10860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g102200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g11070

Limit To All Plant Sequences

>Glyma04g11070.2   sequence type=transcript   gene model=Glyma04g11070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTGACGAAAGGACATTAAAGAGAACATTTAGAGTAGAGGGAGCGTTGGGATGGCATTTAAAGCTGATACGCCTAACCAAGTATTATTAGCTCACTCACTAGTGTTGCTGTAAATTGCATAGTATGGACCCTCCCTTCATTTAACCATTTACCATCATCACATCACCAACTTGAATGAAAATCTAATCTCAACTCTCTCCAAAACCAAGTCTTAGTTAGAGACTTAAGACTCTCTCTCTATATCACTATATCTAACTTTGGCGGTGGCATTCACCACTCACTGACTCGGGCATGGCAAACGACGCTGCTCTGAGAACCTCTCTGCTCTGGCTTGCAGCAGTTATATTGGTGGTTGGAATATGCACCCACTCTTTCAAGAAGATGATGGCCACCTATGTCTTGGGTGTTCTTGGGATTGCTGCTCTGCTTCTTCCTGATTGGGATTACTTCAACCGAGATTTCTCTCGTTGGCCTTACCCTGTCACTGCTGAGGAAAGGGCCAATTCTTCTATTCATGCCCAAGGATCTGGTTTTTTAAGGTTTGCGAATTCTCCTCTGAGGGTGATTGCTTATAGCGTGGTTTATGGATATGCTATGTACAAATGGTGGGAGTATGTATCAACCTAATGAATGATTAACGAGTTTTAATTGTTTAGCAGCAGCAGCAGCAGCAGCAACTGTTGGTTCCTCTGAATCCCAATTTTTAGCTATGAAGATGCATTCTACTCAGCTCGAGCCAACGTGATTAGACGGAGCCTTCTTCTTCAGGCAGGGCATGTTTTTGTCAACCAGCTGAAAATTCTAGAGTATAGTCATACGACTTTTCTTATCGAATACGTGCTTTAAAATCGATTAAATGTCATGAGTCATGACATCAAAATATAATCACAAAACATTTTCCTAAATTTTGATGATTATATATTTTTAGTTATTTAGCATAAATTGAGGATGCGACAAGTGTAAAAGTGCCCAAAAGTGCCCCTTGCTGAGGCATAGATATTAGATAATATTGCCTTACCGCATGCTGTTTTCTTGTGAACATGAATGGTTGCTAATAGAGGAGCTTATTTTTTTAATTAGTTTTGAAATTTTAAATAGGCCATTTATTTAAATT

Coding sequences of Glyma04g11070

Limit To All Plant Sequences

>Glyma04g11070.1   sequence type=CDS   gene model=Glyma04g11070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAACGACGCTGCTCTGAGAACCTCTCTGCTCTGGCTTGCAGCAGTTATATTGGTGGTTGGAATATGCACCCACTCTTTCAAGAAGATGATGGCCACCTATGTCTTGGGTGTTCTTGGGATTGCTGCTCTGCTTCTTCCTGATTGGGATTACTTCAACCGAGATTTCTCTCGTTGGCCTTACCCTGTCACTGCTGAGGAAAGGGCCAATTCTTCTATTCATGCCCAAGGATCTGGTTTTTTAAGGTTTGCGAATTCTCCTCTGAGGGTGATTGCTTATAGCGTGGTTTATGGATATGCTATGTACAAATGGTGGGAGTATGTATCAACCTAA

>Glyma04g11070.2   sequence type=CDS   gene model=Glyma04g11070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAACGACGCTGCTCTGAGAACCTCTCTGCTCTGGCTTGCAGCAGTTATATTGGTGGTTGGAATATGCACCCACTCTTTCAAGAAGATGATGGCCACCTATGTCTTGGGTGTTCTTGGGATTGCTGCTCTGCTTCTTCCTGATTGGGATTACTTCAACCGAGATTTCTCTCGTTGGCCTTACCCTGTCACTGCTGAGGAAAGGGCCAATTCTTCTATTCATGCCCAAGGATCTGGTTTTTTAAGGTTTGCGAATTCTCCTCTGAGGGTGATTGCTTATAGCGTGGTTTATGGATATGCTATGTACAAATGGTGGGAGTATGTATCAACCTAA

Predicted protein sequences of Glyma04g11070

Limit To All Plant Sequences

>Glyma04g11070.1   sequence type=predicted peptide   gene model=Glyma04g11070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANDAALRTSLLWLAAVILVVGICTHSFKKMMATYVLGVLGIAALLLPDWDYFNRDFSRWPYPVTAEERANSSIHAQGSGFLRFANSPLRVIAYSVVYGYAMYKWWEYVST*

>Glyma04g11070.2   sequence type=predicted peptide   gene model=Glyma04g11070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANDAALRTSLLWLAAVILVVGICTHSFKKMMATYVLGVLGIAALLLPDWDYFNRDFSRWPYPVTAEERANSSIHAQGSGFLRFANSPLRVIAYSVVYGYAMYKWWEYVST*

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