Glyma04g11020 - SoyBase

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Report for Sequence Feature Glyma04g11020

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9302118
stop:	9302723
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07320	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein L4 \| chr1:2249190-2250189 FORWARD LENGTH=280	SoyBase	E_val: 1.00E-52	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0000311	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid large ribosomal subunit	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009547	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid ribosome	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
GO:0008266	GO-mf	Annotation by Michelle Graham. GO Molecular Function: poly(U) RNA binding	SoyBase	N/A	ISS
PTHR10746	Panther	50S RIBOSOMAL PROTEIN L4	JGI		ISS
PTHR10746:SF2	Panther	gb def: l4p-like ribosomal protein, mitochodrial [schizosaccharomyces pombe]	JGI		ISS
PF00573	PFAM	Ribosomal protein L4/L1 family	JGI		ISS
UniRef100_B9SHY1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L4, putative n=1 Tax=Ricinus communis RepID=B9SHY1_RICCO	SoyBase	E_val: 5.00E-59	ISS
UniRef100_I1JVE2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JVE2_SOYBN	SoyBase	E_val: 3.00E-128	ISS

Expression Patterns of Glyma04g11020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g11020 not represented in the dataset	Glyma04g11020 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g11020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g101800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g11020

Limit To All Plant Sequences

>Glyma04g11020.2   sequence type=CDS   gene model=Glyma04g11020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCACTTTCCCTCTCTCTCTCCACACCAACAACACCAACCTCTCTTTCCTTCACATCATCCTCCATCTTCTTCTCTTCACACCAATTCCACACACACAATAATTCTTTCAAGTCCAACAACTTTCCCATTTTACCCTCCAAAAACCCCCTCTCCATTTCCTGCAAGGCCTCCCCTCCTCTTCCCGTCCTCAACTTCTCTGGCGAGAAGGTCGGCGAGTCCTTCCTCGACCTCCGCTTCACCCCTCCCGACACCGCTCGTGTCGTCGTCCACCATGCCGTCGTCACCGACCTCCAGAACAAGCGCCGCGGCACCGCCTCCACCCTCACCCGCGGCGAGGTCCGAGGCGGCGGCCGGAAGCCCTTCCTGCAGAAAAAAACCAGTCGCGCCTACCGGCCCTGCGGAGGCGTCATCTTCGGCCCGAAGCCCCACGACTGGTGCATCAAGATCAACTGCAAGGAGAAGCGCCTCGCCATCTCCACCGCTGTTGCCAACGTCGTCGCCAGTGCCGTTGTGGTGGAGGACTTTGCGGCGGAGTTCGCCGAGAAGCTAAAGACGAAGGAGTTCATCGCAGCGATGAAGCTGTTGCAAGAGAGAGAATAG

Predicted protein sequences of Glyma04g11020

Limit To All Plant Sequences

>Glyma04g11020.2   sequence type=predicted peptide   gene model=Glyma04g11020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLSLSLSTPTTPTSLSFTSSSIFFSSHQFHTHNNSFKSNNFPILPSKNPLSISCKASPPLPVLNFSGEKVGESFLDLRFTPPDTARVVVHHAVVTDLQNKRRGTASTLTRGEVRGGGRKPFLQKKTSRAYRPCGGVIFGPKPHDWCIKINCKEKRLAISTAVANVVASAVVVEDFAAEFAEKLKTKEFIAAMKLLQERE*

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