Glyma04g11000 - SoyBase

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Report for Sequence Feature Glyma04g11000

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9250133
stop:	9253882
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g11000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G34750	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr1:12736386-12737727 REVERSE LENGTH=282	SoyBase	E_val: 8.00E-161	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF149	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_A2Q6E4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2C-like n=2 Tax=Medicago truncatula RepID=A2Q6E4_MEDTR	SoyBase	E_val: 5.00E-172	ISS
UniRef100_I1JVE0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVE0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g11000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g11000

Paralog	Evidence	Comments
Glyma06g10820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g11000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g101400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g11000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g11000

Limit To All Plant Sequences

>Glyma04g11000.2   sequence type=transcript   gene model=Glyma04g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATGTTTTGTTGTGGGTACCCTTTTTCCTTGGCATCAGAGAAATACTATAATTTTCTTTTCCCCTGTCTTTGCAAAGCTTATGGTTCCCGAAACGGTTACATAATTATACCATAACACAGAAACATAGGCATCCTACGACTCCTTTCTGTCTCACACACAACACAAGCTCGCTTCTGTAATTTTAGCTTTTGCGAACTTCGAAGGGAAACAGCATGGACTATCCGAGTCCAAGTACAAGTTGAATCCTTTATCAATTTTGATTGGACTGGTTGTGATTCTGGACACAGAAAGTGGGTTTCTTTTCAAATTTGAATTCAAGGTGTCAACCTAGTGGTTTGTGCTGAGAATTGGTTGAAAATATTGAAGAAGCTGCTCAAACTTTTTTCCTTTCATTCATGGACAAGTTATGCTGTTTTAAGGATTCATACTCTCAGGACTATTCTATTTCTCTGTGTTGGTTGCTTTACAGCTTGTAGCAGCACGTTCTTCGTCCAGCACTGGTAAGGGGAAAAATCATGAAGGCTCAATAAAGTATGGTTTCAGCCTTGTAAAAGGGAAAGCTAATCACCCAATGGAGGATTATCATGTTGCCAAGTTTGCGCAGATACAGGATAATGAATTGGGTTTATTTGCAATTTATGATGGTCACGTGGGTGACCGTGTGCCTGCCTACTTACAGAAACATTTGTTTACCAACATTTTGAGGGAGGAGGAATTTTGGGAGGACCCCACTCTTTCTATCTCGAAAGCATATGAGAGCACAGATCAGGAAATTCTATCACATAGTTCTGATCTTGGGCGTGGTGGATCAACGGCAGTAACTGCTATATTGATCAATGGGCGAAGGTTATGGATAGCTAATGTTGGAGACTCACGAGCTGTTCTTTCAAGAAAAGGTCAAGCTGTACAAATGACTACAGACCATGAGCCTAACACAGAACGAGGCAGCATTGAGACTAGAGGTGGTTTTGTGTCTAACTTGCCAGGTGATGTGCCTAGAGTAAATGGAAAACTTGCTGTTTCTCGTGCATTTGGAGACAAGAGTCTCAAGTCCCATTTGCGATCAGACCCTGATGTACAGAATACTGATGTAGATGTTGATACTGAGATTCTAATCCTTGCAAGTGATGGAATTTGGAAGGTAATGACTAATCAAGAGGCAGTGGATATCGCTAGAAGAACAACGAGAGACCCGCAGAAAGCAGCTAAACAACTAACAGCTGAAGCATTAAAAAGAGATAGTAAAGATGATATATCTTGTGTTGTGGTTAAATTCAGATGATGGTATCTTTCAAACCATGTGCGTGCCGGGGTGCAGTTTATAACAATAATAAAGGTGCATGTCTATGGAGCATGTCAACTTATGGTCTGGACCAAACAACTTATATTACATACTTGTTTGGGTTAGTCCTGACTGAATTTTTCTGAATAGGTAATTTGCCAAAGAAAAAGGAAGGGTTTGTGAAGCACTAAATCGTGTTTTTTTTAATAGATTTTGTGGTTTGAGAATGTTTGATTTATTTCTGCAAAAGTGTGACTACTCAGAATCTGTTGTATATTGTCTTTTTATTGTTCATAAAAGACCTAGCGGCTGTGTAAAAGACGAATATGCTTGTAGTTATTGATTGGGGTATAGTGAGTGCTAGGATGATAGGTCCTATCCATGGTTGTATACCACATTCTTTGATAGAAGTGGACCCTCTTTTCCTTTGTTCCATTTTCCAAATGAGAGGAGGTTCCATGTGACACAAGCTTTTGATACCATAAGTATATTAGTGTTACATGTATTTTTCACATAATTTCATTAAATGAACAACAGCCTCTTTGATTCTTAGTTCACAATAAAACTAAAATATGTTGCACAATTTCTTGTTTGTTTTTTTACCAAACATGAGGACATTCTATTGTCA

Coding sequences of Glyma04g11000

Limit To All Plant Sequences

>Glyma04g11000.1   sequence type=CDS   gene model=Glyma04g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAGTTATGCTGTTTTAAGGATTCATACTCTCAGCTTGTAGCAGCACGTTCTTCGTCCAGCACTGGTAAGGGGAAAAATCATGAAGGCTCAATAAAGTATGGTTTCAGCCTTGTAAAAGGGAAAGCTAATCACCCAATGGAGGATTATCATGTTGCCAAGTTTGCGCAGATACAGGATAATGAATTGGGTTTATTTGCAATTTATGATGGTCACGTGGGTGACCGTGTGCCTGCCTACTTACAGAAACATTTGTTTACCAACATTTTGAGGGAGGAGGAATTTTGGGAGGACCCCACTCTTTCTATCTCGAAAGCATATGAGAGCACAGATCAGGAAATTCTATCACATAGTTCTGATCTTGGGCGTGGTGGATCAACGGCAGTAACTGCTATATTGATCAATGGGCGAAGGTTATGGATAGCTAATGTTGGAGACTCACGAGCTGTTCTTTCAAGAAAAGGTCAAGCTGTACAAATGACTACAGACCATGAGCCTAACACAGAACGAGGCAGCATTGAGACTAGAGGTGGTTTTGTGTCTAACTTGCCAGGTGATGTGCCTAGAGTAAATGGAAAACTTGCTGTTTCTCGTGCATTTGGAGACAAGAGTCTCAAGTCCCATTTGCGATCAGACCCTGATGTACAGAATACTGATGTAGATGTTGATACTGAGATTCTAATCCTTGCAAGTGATGGAATTTGGAAGGTAATGACTAATCAAGAGGCAGTGGATATCGCTAGAAGAACAACGAGAGACCCGCAGAAAGCAGCTAAACAACTAACAGCTGAAGCATTAAAAAGAGATAGTAAAGATGATATATCTTGTGTTGTGGTTAAATTCAGATGA

>Glyma04g11000.2   sequence type=CDS   gene model=Glyma04g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATTATCATGTTGCCAAGTTTGCGCAGATACAGGATAATGAATTGGGTTTATTTGCAATTTATGATGGTCACGTGGGTGACCGTGTGCCTGCCTACTTACAGAAACATTTGTTTACCAACATTTTGAGGGAGGAGGAATTTTGGGAGGACCCCACTCTTTCTATCTCGAAAGCATATGAGAGCACAGATCAGGAAATTCTATCACATAGTTCTGATCTTGGGCGTGGTGGATCAACGGCAGTAACTGCTATATTGATCAATGGGCGAAGGTTATGGATAGCTAATGTTGGAGACTCACGAGCTGTTCTTTCAAGAAAAGGTCAAGCTGTACAAATGACTACAGACCATGAGCCTAACACAGAACGAGGCAGCATTGAGACTAGAGGTGGTTTTGTGTCTAACTTGCCAGGTGATGTGCCTAGAGTAAATGGAAAACTTGCTGTTTCTCGTGCATTTGGAGACAAGAGTCTCAAGTCCCATTTGCGATCAGACCCTGATGTACAGAATACTGATGTAGATGTTGATACTGAGATTCTAATCCTTGCAAGTGATGGAATTTGGAAGGTAATGACTAATCAAGAGGCAGTGGATATCGCTAGAAGAACAACGAGAGACCCGCAGAAAGCAGCTAAACAACTAACAGCTGAAGCATTAAAAAGAGATAGTAAAGATGATATATCTTGTGTTGTGGTTAAATTCAGATGA

Predicted protein sequences of Glyma04g11000

Limit To All Plant Sequences

>Glyma04g11000.1   sequence type=predicted peptide   gene model=Glyma04g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKLCCFKDSYSQLVAARSSSSTGKGKNHEGSIKYGFSLVKGKANHPMEDYHVAKFAQIQDNELGLFAIYDGHVGDRVPAYLQKHLFTNILREEEFWEDPTLSISKAYESTDQEILSHSSDLGRGGSTAVTAILINGRRLWIANVGDSRAVLSRKGQAVQMTTDHEPNTERGSIETRGGFVSNLPGDVPRVNGKLAVSRAFGDKSLKSHLRSDPDVQNTDVDVDTEILILASDGIWKVMTNQEAVDIARRTTRDPQKAAKQLTAEALKRDSKDDISCVVVKFR*

>Glyma04g11000.2   sequence type=predicted peptide   gene model=Glyma04g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDYHVAKFAQIQDNELGLFAIYDGHVGDRVPAYLQKHLFTNILREEEFWEDPTLSISKAYESTDQEILSHSSDLGRGGSTAVTAILINGRRLWIANVGDSRAVLSRKGQAVQMTTDHEPNTERGSIETRGGFVSNLPGDVPRVNGKLAVSRAFGDKSLKSHLRSDPDVQNTDVDVDTEILILASDGIWKVMTNQEAVDIARRTTRDPQKAAKQLTAEALKRDSKDDISCVVVKFR*

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