Report for Sequence Feature Glyma04g10990
Feature Type: gene_model
Chromosome: Gm04
Start: 9245522
stop: 9249148
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g10990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G34780 AT
Annotation by Michelle Graham. TAIR10: APR-like 4 | chr1:12748835-12750124 REVERSE LENGTH=310
SoyBase E_val: 6.00E-111 ISS
GO:0045454 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
KOG2640
KOG
Thioredoxin
JGI ISS
PTHR18929 Panther
PROTEIN DISULFIDE ISOMERASE
JGI ISS
PF00085 PFAM
Thioredoxin
JGI ISS
UniRef100_I1JVD9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVD9_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9SA00 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 5'-adenylylsulfate reductase-like 4 n=1 Tax=Arabidopsis thaliana RepID=APRL4_ARATH
SoyBase E_val: 3.00E-108 ISS
Expression Patterns of Glyma04g10990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g10990
Paralog Evidence Comments
Glyma06g10810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g10990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g101300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g10990
Coding sequences of Glyma04g10990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g10990.1 sequence type=CDS gene model=Glyma04g10990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGATGAGGGTTTGGGGATCCGAGATCGTGTTCGCCCTATTGCTATGTGGGACCCTCTCATGCACTGCTCAAGCTATTCATAATAGGGTTTCTCTCTCCACCACCACCACCACCACCACCATCTGTCCTGCTCGTTCCCTCCTCGATTTCATCTTAGGGTTTCCAGATTCCACCTGCCCTCTTCCCAATTCTCTTGGATCCATTGCCGTCACCGAGGGAGATGAGGTTTCTTTGCAGAAGGCGCTGAATATGGTTCACAAGAATAATCATGAATATGTGGCTGTGCTCTTCTATGCGTCCTGGTGCCCTTTCTCTCGGGTGTTTAGATCAGTTTTCTCTGTTCTCTCTGCGCTACACCCTTCCATTCCTCATTTTGCCATTGAAGAATCATTGGTTAGGCCAAGCATACTGTCCAAATATGGTGTCCATGGTTTCCCTACACTGTTCATTTTGAATTCTACGATGCGGGTTCGGTATCATGGGTCCCGGACCCTTGGCTCACTCATTGGTTTCTACAATGATGTTACTGGGATTATGATTGATTCACTTGATCAGCTATCACTTGAGAAAATTGGTCGTTCATCTGCCGATGAGAGTCATGGTAACACCGAGCCAGAAAGTTGTCCATTTTCATGGGCTAGATCTCCAGAAAACTTACTACGTCAGGAAACTTATTTGGCTCTGGCCACTACATTTGTGGTTTTGAGATTACTATACTTGTTTTTCCCTACGCTGCTTATATGTATTCAATATACTTGGAGAAGGGTCATCCAAAATATTAGAATATGGAGCTTGCTTGAACATCCTTTGGTTTATTTGAAGCGCCTAACACAGTCATTTAACTGTTTGAAAGAGCCATGCAAGAGACGTAATCTGCAGGAAGGAGCAATGAATGCTAGAGCATGGGCTTCCAAGTCCCTTGCCACCGTTTCAATTGGAGAGGAAAGCAGCAGCCGTGGGATGCATCTGTGA
Predicted protein sequences of Glyma04g10990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g10990.1 sequence type=predicted peptide gene model=Glyma04g10990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRMRVWGSEIVFALLLCGTLSCTAQAIHNRVSLSTTTTTTTICPARSLLDFILGFPDSTCPLPNSLGSIAVTEGDEVSLQKALNMVHKNNHEYVAVLFYASWCPFSRVFRSVFSVLSALHPSIPHFAIEESLVRPSILSKYGVHGFPTLFILNSTMRVRYHGSRTLGSLIGFYNDVTGIMIDSLDQLSLEKIGRSSADESHGNTEPESCPFSWARSPENLLRQETYLALATTFVVLRLLYLFFPTLLICIQYTWRRVIQNIRIWSLLEHPLVYLKRLTQSFNCLKEPCKRRNLQEGAMNARAWASKSLATVSIGEESSSRGMHL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
