Glyma04g10930 - SoyBase

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Report for Sequence Feature Glyma04g10930

Feature Type:	gene_model
Chromosome:	Gm04
Start:	9201046
stop:	9203010
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G08940	AT	Annotation by Michelle Graham. TAIR10: Ubiquitin carboxyl-terminal hydrolase family protein \| chr4:5730986-5732173 REVERSE LENGTH=395	SoyBase	E_val: 0	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF11955	PFAM	Plant organelle RNA recognition domain	JGI		ISS
UniRef100_A0MFS5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase-like protein n=1 Tax=Arabidopsis thaliana RepID=A0MFS5_ARATH	SoyBase	E_val: 5.00E-46	ISS
UniRef100_I1JVD2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVD2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g10930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10930

Paralog	Evidence	Comments
Glyma06g10770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g100900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g10930

Limit To All Plant Sequences

>Glyma04g10930.1   sequence type=CDS   gene model=Glyma04g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGGCGCTTCTTCTCCTTCCTTTCTAAAACCCTAAACCCTAACCGCAACCCCTCTTCCTCCACATCCCCGTTCTCCACCTCCTTCCTCGTCACCAAAACCCCCAAAAAATTCAAGAAAAAACGCAAACCCAAACCCAGCCCGAGAACCACCCCGGTCCAGACCGAACCGAACCGCATCCCCCAATTCGAGCGCATTCTCCACCGCGACGCCCTCCTCCGCTTCGTGACCCGCTCGAAGCAGTTCCTCTCCGCCCAGCCGGAGCACGTCCTCCGCCTCGACGACGCCGGCAAGCTCCACCGCGAGCTCGGGTTCCCGCGCGGCCGCAAGGTCTCCCGCTTCCTCCTGCGCCACCCGCTCCTCTTCCAGACCTACCGCCACTCCGACGGCAAAACATGGCTAGGGTTCACCGACCTTATGGAGGACCTCCTCGCAGAGGAACGCTCCCTCATGGACCAATTGGAACTCGACCGCGTCGAGAAGGTTCGGAAGCTCCTCATGATGTCCGCGCGCAACCGCATCCCCCTCAGCAAGATCCACCACTGCAGAACCCTATTTGGCATCCCCGACGATTTCCGCGATAGGGTTTCCAAATACCCTAATTTTTTCAATATTGTGGTTGAAAACGACGGGAGGAGGGTGCTGGAGTTGGTTAACTGGGACCCACTTCTGGCAGTGAGTGCCTTAGAGAAAGAGTTCGTTGTTGACGAGGATTCCGCGAAGAGGAAGTTTAGGTTTCCGGTGAAGTATGGGAAGGATTTGGATTTGGAATTGGATGATAGTAGGAAGCTTAATTTGCTCAACGCGCTTCCTTTGGTGTCTCCGTATTCGGATGGGTGTAAGATTGATGTGTGGACGTTGGAGGCGGAGAAGTATAGGGTTGGGGTGATTCATGAATTCTTGAGCTTGACGTTGGAGAAGAGGGCGTCGATTCATCACCTTGTGGTGTTTAAGGAGGAGTTTAGTTTGACTAAGCATACTTATCAGATGCTGCGGAAGCAGCCGCGGGCGTTTTACTTGGCCGGAACCGAGATGAATTGGGGTGTGTTCTTGAAGGATTCGTATGATGGAAATGGGGTTTTGATTGAGAAGGACCCACAGGTGGTGTTTAATGAGAAGCTTTATAAGTATGCTCAGGTGGACCAAATGGAACCCGGGTGTGATGATGGGGTGGAAGAGCCACATTTGAGTTAA

Predicted protein sequences of Glyma04g10930

Limit To All Plant Sequences

>Glyma04g10930.1   sequence type=predicted peptide   gene model=Glyma04g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAWRFFSFLSKTLNPNRNPSSSTSPFSTSFLVTKTPKKFKKKRKPKPSPRTTPVQTEPNRIPQFERILHRDALLRFVTRSKQFLSAQPEHVLRLDDAGKLHRELGFPRGRKVSRFLLRHPLLFQTYRHSDGKTWLGFTDLMEDLLAEERSLMDQLELDRVEKVRKLLMMSARNRIPLSKIHHCRTLFGIPDDFRDRVSKYPNFFNIVVENDGRRVLELVNWDPLLAVSALEKEFVVDEDSAKRKFRFPVKYGKDLDLELDDSRKLNLLNALPLVSPYSDGCKIDVWTLEAEKYRVGVIHEFLSLTLEKRASIHHLVVFKEEFSLTKHTYQMLRKQPRAFYLAGTEMNWGVFLKDSYDGNGVLIEKDPQVVFNEKLYKYAQVDQMEPGCDDGVEEPHLS*

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