Report for Sequence Feature Glyma04g10920
Feature Type: gene_model
Chromosome: Gm04
Start: 9191648
stop: 9199946
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g10920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G78240 AT
Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:29433173-29435815 REVERSE LENGTH=684
SoyBase E_val: 0 ISS
GO:0009735 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus
SoyBase N/A ISS
GO:0010289 GO-bp
Annotation by Michelle Graham. GO Biological Process: homogalacturonan biosynthetic process
SoyBase N/A ISS
GO:0048364 GO-bp
Annotation by Michelle Graham. GO Biological Process: root development
SoyBase N/A ISS
GO:0048367 GO-bp
Annotation by Michelle Graham. GO Biological Process: shoot development
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0008168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity
SoyBase N/A ISS
PTHR10108 Panther
METHYLTRANSFERASE
JGI ISS
PTHR10108:SF58 Panther
DEHYDRATION-RESPONSIVE PROTEIN-RELATED
JGI ISS
PF03141 PFAM
Putative methyltransferase
JGI ISS
UniRef100_B9RJL5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RJL5_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1JVD1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVD1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g10920
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g10920
Paralog Evidence Comments
Glyma06g10760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g10920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g100700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g10920
Coding sequences of Glyma04g10920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g10920.1 sequence type=CDS gene model=Glyma04g10920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCAGGCCTCTGCACCGAGGGGTATCTATTCGGATCCCTGATAGCAACAATAATGACTTGTGGGACTCTCAATCCAAAGATAAAACAGAAAAAGAAGGTTTGGATAGAAGAGGTTCCTTTGGTCACCCCTCACCCTTGAGGTCTCCCTTTAAGTTGCTTTTTTCGGATAATTCTAATTCCAAATATGGCATCGGTGAGAATGGTTTCTCATCTGATCCCTTCATTATTGGCACTCCAAGAAGTAGGCACAAGTTGGTTCTTCTTTTCTTGAAGTTTAGTTTAGTGTTTATAGTTATTCTTGCTCTTGCTGGATCTTTTTGGTGGACAATCTCAATTTCAACTGCATCAAGAGGTCACATTTACCATGGTTATAGAAGACTCCAAGAGAATCTTGTATCAGACCTGTTGGATATTGGGGAGATTTCTTATGCTCCCTCAAGACTGAAAGAATTGGAATTCTGTTCTGAGGAGTTTGAAAATTATGTTCCTTGCTTTAATGTTTCTGACAATCTAGCTCTTGGTTTTTCTGATGGAAATGAGTTTGACCGGCAATGTCACCATGAGCTCAGGCCTAATTGTTTAGTTCTCTCTCCACCAAATTACAAAATTCCTCTTAGGTGGCCTACTGGAAGGGATATTATCTGGATTGCTAATGCTAAAATAACTGCACAGGAGGTTCTTTCTTCTGGAAGCTTTACCAAAAGGATGATGATGCTTGATGAAGAGCAAATTTCCTTTCGTTCAGCCTCTCTTATGTTTGATGGTGTTGAAGACTACTCACATCAAATCGCAGAAATGATTGGACTCAGAAATGAATCTAGCTTCATACAAGCTGGGGTTAGAACCATACTGGACATTGGCTGTGGTTACGGTAGCTTTGGAGCACACCTCTTTCAGAGTCAGCTTTTAACTATGTGCATTGCAAGCTATGAGCCTTCTGGCAGTCAAGTTCAGCTTACACTTGAGAGGGGTCTTCCTGCTATGGTTGCTTCTTTCACTTCTAAACAATTGCCATATCCATCTCTCTCCTTTGACATGTTGCATTGTGCAAGATGTGGCATTGATTGGGACCGAAAAGATGGCATTCTCATGATTGAAGCTGATAGACTTTTAAGACCGGGGGGCTACTTTGTCTGGACTTCACCACTTACAAATGCTCGTGACAAAGACAGTCAGAAAAGATGGAAGTTCATACAAAGTTTTGCTGAAAACCTTTGCTGGGATATGCTGTCACAGCAAGATGAAACTGTCGTATGGAAGAAAACTAGTAAAAGGAATTGCTATAGTTCAAGAAAGAATAGTTCTCCCCCTCCTTTATGTGGCAGAGGCTATGATGTGGAGTCTCCGTATTATCGAGAACTGCAAAACTGCATAGGAGGAACACATAGCAGCCGCTGGATTTCTGTCCAAGAGAGGGAAACTTGGCCTTCCAGAGATCACTTGAACAAAAAGGAGCTTGCAATCTTTGGGTTGCAATCTGATGAATTTGCTGAGGACTCTGAAAGCTGGAAAGCAGCAGTTCGAAATTATTGGTCTCTTCTGTCACCTTTAATATTTTCTGATCATCCAAAGAGACCTGGTGATGAGGACCCTCCACCACCTTATAACATGCTAAGAAATGTGCTAGACATGAATGCTCATGTTGGTGGTTTTAATTCTGCAATGTTGCAAGCTGGAAAATCCATATGGGTAATGAATGTGGTCCCTCTGAGTGGACTCAACTATCTTCCCTTGATCCAGGATCGAGGTTATGTTGGTGTTTTGCACGATTGGTGTGAGGCCTTCCCAACGTACCCTAGAACCTATGACTTGGTCCATGCAGCAGGACTTTTATCCCTTGAATTTGCTCAGCAGCGCAGCTGTACCATGCTTGACATGTTCATTGAAATTGACAGGTTACTTCGTCCAGAGGGTTGGATTATAATTCGTGACACAGTTCCTTTAATAGAGTCAGCAAGAGCTCTAACAACAAGGCTAAAGTGGGATGCGCGAGTTGTAGAAATTGAAAGTGACAGCGATCAGAGACTCCTGATCTGTCAAAAACCTTTCTTTAAGAGACAGGCAAATTAA
Predicted protein sequences of Glyma04g10920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g10920.1 sequence type=predicted peptide gene model=Glyma04g10920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSRPLHRGVSIRIPDSNNNDLWDSQSKDKTEKEGLDRRGSFGHPSPLRSPFKLLFSDNSNSKYGIGENGFSSDPFIIGTPRSRHKLVLLFLKFSLVFIVILALAGSFWWTISISTASRGHIYHGYRRLQENLVSDLLDIGEISYAPSRLKELEFCSEEFENYVPCFNVSDNLALGFSDGNEFDRQCHHELRPNCLVLSPPNYKIPLRWPTGRDIIWIANAKITAQEVLSSGSFTKRMMMLDEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESSFIQAGVRTILDIGCGYGSFGAHLFQSQLLTMCIASYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMLHCARCGIDWDRKDGILMIEADRLLRPGGYFVWTSPLTNARDKDSQKRWKFIQSFAENLCWDMLSQQDETVVWKKTSKRNCYSSRKNSSPPPLCGRGYDVESPYYRELQNCIGGTHSSRWISVQERETWPSRDHLNKKELAIFGLQSDEFAEDSESWKAAVRNYWSLLSPLIFSDHPKRPGDEDPPPPYNMLRNVLDMNAHVGGFNSAMLQAGKSIWVMNVVPLSGLNYLPLIQDRGYVGVLHDWCEAFPTYPRTYDLVHAAGLLSLEFAQQRSCTMLDMFIEIDRLLRPEGWIIIRDTVPLIESARALTTRLKWDARVVEIESDSDQRLLICQKPFFKRQAN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
