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Report for Sequence Feature Glyma04g10820

Feature Type:gene_model
Chromosome:Gm04
Start:9057040
stop:9059283
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g10820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G35160AT Annotation by Michelle Graham. TAIR10: GF14 protein phi chain | chr1:12867264-12868514 FORWARD LENGTH=295 SoyBaseE_val: 8.00E-164ISS
GO:0009742GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005635GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0019904GO-mf Annotation by Michelle Graham. GO Molecular Function: protein domain specific binding SoyBaseN/AISS
GO:0045309GO-mf Annotation by Michelle Graham. GO Molecular Function: protein phosphorylated amino acid binding SoyBaseN/AISS
KOG0841 KOG Multifunctional chaperone (14-3-3 family) JGI ISS
PTHR18860Panther 14-3-3 JGI ISS
PF00244PFAM 14-3-3 protein JGI ISS
UniRef100_E9KNA4UniRef Annotation by Michelle Graham. Most informative UniRef hit: SGF14h n=1 Tax=Glycine max RepID=E9KNA4_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JVB9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVB9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g10820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10820
ParalogEvidenceComments
Glyma06g10650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g099900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g10820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g10820
>Glyma04g10820.3   sequence type=transcript   gene model=Glyma04g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCTTTCGTCGTTCTCCGTCTCCCTCATTTGTTCACTTTCTCTCTCTAAATCCCTAAACCAGATCTCGCACTCGCGCTTTCTCTCTCTAGGATTCGACAATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTGTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAGCTCACCGTCGAGGAGAGGAACCTCCTCTCCGTCGCGTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGACCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATTCTCAAGCTCCTCGACTCTCGCCTCATTCCCTCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGGTACCTCGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCTCAGGACATTGCAAATGCCGAACTGCCTCCAACTCATCCAATTAGGCTTGGCCTTGCACTTAACTTCTCTGTATTTTACTACGAAATCCTTAACTCTCCCGATCGTGCCTGCAACCTTGCAAAACAGGTTAGATTCAGATATAGTGAATATCTTGGCCTTTGTTTTGCTCTGTTTATTTTTGTTTTACAACATTTTGAGCAATGTTTTGGATGTTTCCCGTGAAAAGAGGAAGGAATTGGGCCCCATACAGTGAAATTTGCAGCTATTATTGTCCATTAATTCGAATAACTTTATGGCTACTCCCATAATGCATTTCGTTAATGTCGAAGCAACAATGATAGCTACTCGTTGGATTCTGGCGGCTAAATATGGAGTTCGCTTTGTACAGTTGTTGCTTACTTTACCTGTAGCTAAAATGAGTTGTCAAATATTTGGTGGATTTCACAGTAGGTGTTTGGAAGTCTAATAATTATAAGCTAGCAAACAACAATCGATCAATTTTTGACTACTTAATCTAGGTACTGGTATAGATGGGAATCTGACCTTAGTAATACCGGTGGAATATATTCTTTTAGTTTTTGATGTGAAAATGTTC

>Glyma04g10820.4   sequence type=transcript   gene model=Glyma04g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCTTTCGTCGTTCTCCGTCTCCCTCATTTGTTCACTTTCTCTCTCTAAATCCCTAAACCAGATCTCGCACTCGCGCTTTCTCTCTCTAGGATTCGACAATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTGTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAGCTCACCGTCGAGGAGAGGAACCTCCTCTCCGTCGCGTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGACCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATTCTCAAGCTCCTCGACTCTCGCCTCATTCCCTCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGGTACCTCGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCTCAGGTTAACCGTTTATTTCTCTTCTTTCTTTTCTGATTTTGCGATTCAGATCTGTTCGGTTTTTGCTCCAGATTTGCGATTGTGCTTTACTGTTTTCCGATTTTTGTTATTCTGACTGTGAAATCTATGTGATTATTTACTCGATGCAGTTCTTTGGAGCGGTTATGCGTTATTCTTTTTCTTGTTTAAAATGTTTTGGCTTAATATGGATTTTAACTGCTGATATTTTCCCATTGCAAATGAAATAATAAAATATCTGCGTGCTTTTATTCTGTACGAATTGGTATGAACGATTTTCGTTGTGGTGCTTTTGTTACTCTATTGGTTTAACGAATGAACATGTTACTTTGTTTTTCAGGACATTGCAAATGCCGAACTGCCTCCAACTCATCCAATTAGGCTTGGCCTTGCACTTAACTTCTCTGTATTTTACTACGAAATCCTTAACTCTCCCGATCGTGCCTGCAACCTTGCAAAACAGGCTTTTGATGAAGCTATTGCTGAATTGGATACACTGGGAGAGGAGTCATACAAGGATAGCACTCTGATCATGCAACTCCTTCGTGATAACCTCACCCTTTGGACCTCTGACATGCAGGATGATGGAGCAGATGAAATTAAAGAAGCAGCACCGAAACAGGATGACCAGTAAAAATATTTTACTGCTAATTAGAATTGAACTTCTCCTCCATATCTTTTTGAAGGGAGAAGGTGTTTGTTGCTAATATCTCTTTGGTACTGAGATTTTAGGCATTCATGTTTGTTATGATTGTGGATGTACTGGGCCGTTTTTAGTTTGTCCTTCCATTTTCAAGTGTTTTGCCAAATTGCCTATTTTATTAAGGACGCTGAAGTTTTTATTATATGGAATTGGAATTTTAAGATTCTTCTCTTCTATCTAGTAAACTTGATGTCACCCGCTTATATTGTGAGGATTAGATATATTTGTATTCTTTTTGAAGCCTCGATATTTAAATTTAGTTTGATTGGAATTGGGTTTGTTCTCGTT
Coding sequences of Glyma04g10820
>Glyma04g10820.1   sequence type=CDS   gene model=Glyma04g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTGTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAGCTCACCGTCGAGGAGAGGAACCTCCTCTCCGTCGCGTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGACCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATTCTCAAGCTCCTCGACTCTCGCCTCATTCCCTCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGGTACCTCGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCTCAGGACATTGCAAATGCCGAACTGCCTCCAACTCATCCAATTAGGCTTGGCCTTGCACTTAACTTCTCTGTATTTTACTACGAAATCCTTAACTCTCCCGATCGTGCCTGCAACCTTGCAAAACAGGCTTTTGATGAAGCTATTGCTGAATTGGATACACTGGGAGAGGAGTCATACAAGGATAGCACTCTGATCATGCAACTCCTTCGTGATAACCTCACCCTTTGGACCTCTGACATGCAGGTATTGATTTTAGGTTGCCATAGCTCATCCATCACTTCTTTTTTTATTTCCCTTTTTTGTGTTGTCGACTTATTATTGTGGTTTCAGGATGATGGAGCAGATGAAATTAAAGAAGCAGCACCGAAACAGGATGACCAGTAA

>Glyma04g10820.3   sequence type=CDS   gene model=Glyma04g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTGTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAGCTCACCGTCGAGGAGAGGAACCTCCTCTCCGTCGCGTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGACCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATTCTCAAGCTCCTCGACTCTCGCCTCATTCCCTCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGGTACCTCGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCTCAGGACATTGCAAATGCCGAACTGCCTCCAACTCATCCAATTAGGCTTGGCCTTGCACTTAACTTCTCTGTATTTTACTACGAAATCCTTAACTCTCCCGATCGTGCCTGCAACCTTGCAAAACAGGTTAGATTCAGATATAGTGAATATCTTGGCCTTTGTTTTGCTCTGTTTATTTTTGTTTTACAACATTTTGAGCAATGTTTTGGATGTTTCCCGTGA

>Glyma04g10820.4   sequence type=CDS   gene model=Glyma04g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTGTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAGCTCACCGTCGAGGAGAGGAACCTCCTCTCCGTCGCGTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGACCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATTCTCAAGCTCCTCGACTCTCGCCTCATTCCCTCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGGTACCTCGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCTCAGGTTAACCGTTTATTTCTCTTCTTTCTTTTCTGA
Predicted protein sequences of Glyma04g10820
>Glyma04g10820.1   sequence type=predicted peptide   gene model=Glyma04g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAPSPREENVYMAKLAEQAERYEEMVEFMEKVSAAADNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQVLILGCHSSSITSFFISLFCVVDLLLWFQDDGADEIKEAAPKQDDQ*

>Glyma04g10820.3   sequence type=predicted peptide   gene model=Glyma04g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAPSPREENVYMAKLAEQAERYEEMVEFMEKVSAAADNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRFRYSEYLGLCFALFIFVLQHFEQCFGCFP*

>Glyma04g10820.4   sequence type=predicted peptide   gene model=Glyma04g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAPSPREENVYMAKLAEQAERYEEMVEFMEKVSAAADNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKAAQVNRLFLFFLF*






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