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Report for Sequence Feature Glyma04g10780

Feature Type:gene_model
Chromosome:Gm04
Start:9039325
stop:9040772
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g10780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78310AT Annotation by Michelle Graham. TAIR10: VQ motif-containing protein | chr1:29464003-29464938 REVERSE LENGTH=311 SoyBaseE_val: 2.00E-55ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF05678PFAM VQ motif JGI ISS
UniRef100_I1JVB8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVB8_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9M9F0UniRef Annotation by Michelle Graham. Most informative UniRef hit: F3F9.15 n=1 Tax=Arabidopsis thaliana RepID=Q9M9F0_ARATH SoyBaseE_val: 9.00E-53ISS

Proteins Associated with Glyma04g10780
LocusGene SymbolProtein Name
VQ10 VQ motif containing protein gene 10

Expression Patterns of Glyma04g10780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10780
ParalogEvidenceComments
Glyma06g10630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g099600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g10780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g10780
>Glyma04g10780.1   sequence type=CDS   gene model=Glyma04g10780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAAGCTGTGATCCCTCTGCAGACTCTACTAGCACATCCCTTCCTGCCAACCCCAACAACAATAGCAGGGATCAATATCTTCGCCACCTCAACAAGCTTTCTCAAAAGATCTCCAAACCCCTCATTAAGAAACCCACCTTCGACCCTCCTCAGGCCCAAGCCCAAGCCCCAAACCCAAACAATCAGGTGCAGGCGCAGCAGAACCTGCAACATCAGCCGCCGGTGTACAACATCAACAAGAACGACTTCCGTGATGTGGTTCAGAAACTGACGGGCTCACCTGCGCACGACCGTATCTCAACACCGCCTCCCATTCAGCCACCCAAGCCACCGAGTTCGCGTCTGCAGCGGATTCGTCCTCCTCCGTTGCCGCAAATTACTAACCGCCCACCCCCGCTACTCAACCCCACCACCCTCCCCCGCCCTCAACTCCCTAACGCCGTTACCTTCAACAACTTCTCCGTCTTTTCCAGACCCCCCGCGCCGTTATCTCCTCTGCCGCCGTTCCCCACCGTCCACGCGCCTGCTGAGTCACCCATCTCCGCCTACATGCGCGATCTGCAGACTCTCGTCGATTCAAACGCCAGACACTTTTCTGGCTTTTCTCCCTTTCCTCCACCGCCTCAGCCTCAACAAGAGCAACAGCAGCAGCAAGCGATGCTTCCGTCGCAAGCACCGTCGTCGTTTCAGCTGCCGTCTTCGCCTGTGCCGTTTGGGTGTCTGAATTCGCAGCTGGCGTCCTACCCTCTTCTGTCGCCGGGGCTTCTGTTTTCCCCAACTTCTGGTCAGTTAGGGTTTCCGCAGCTTCCGCTTTCGCCGACCGTGCCGGTTCCTAGCCCTCGCTGGAAGGGAATTTGA
Predicted protein sequences of Glyma04g10780
>Glyma04g10780.1   sequence type=predicted peptide   gene model=Glyma04g10780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKSCDPSADSTSTSLPANPNNNSRDQYLRHLNKLSQKISKPLIKKPTFDPPQAQAQAPNPNNQVQAQQNLQHQPPVYNINKNDFRDVVQKLTGSPAHDRISTPPPIQPPKPPSSRLQRIRPPPLPQITNRPPPLLNPTTLPRPQLPNAVTFNNFSVFSRPPAPLSPLPPFPTVHAPAESPISAYMRDLQTLVDSNARHFSGFSPFPPPPQPQQEQQQQQAMLPSQAPSSFQLPSSPVPFGCLNSQLASYPLLSPGLLFSPTSGQLGFPQLPLSPTVPVPSPRWKGI*






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